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Evolutionary Classification of Protein Domains

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33: 367: 100: 72: 79: 275:, ECOD compiles domains instead of whole proteins. However, ECOD focuses on evolutionary relationships more heavily: instead of grouping proteins by 166: 86: 68: 408: 272: 93: 382: 53: 447: 119: 432: 442: 401: 57: 437: 427: 394: 303:
Cheng, H; Schaeffer, RD; Liao, Y; Kinch, LN; Pei, J; Shi, S; Kim, BH; Grishin, NV (December 2014).
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H. Cheng, R. D. Schaeffer, Y. Liao, L. N. Kinch, J. Pei, S. Shi, B. H. Kim, N. V. Grishin.
8: 374: 249: 320: 339: 304: 284: 344: 257: 184: 334: 324: 42: 329: 253: 160: 378: 260:. The ECOD tries to determine the evolutionary relationships between proteins. 148: 421: 276: 268: 348: 188: 47: 32: 211: 234:
manual for new proteins; automated for ones with close matches
366: 264: 305:"ECOD: an evolutionary classification of protein domains" 302: 60:. Unsourced material may be challenged and removed. 419: 69:"Evolutionary Classification of Protein Domains" 40:An editor has performed a search and found that 167:University of Texas Southwestern Medical Center 242:Evolutionary Classification of Protein Domains 402: 409: 395: 338: 328: 283:, ECOD groups proteins by demonstratable 120:Learn how and when to remove this message 14: 420: 361: 58:adding citations to reliable sources 26: 24: 25: 459: 365: 31: 296: 212:http://prodata.swmed.edu/ecod/ 13: 1: 290: 279:, which may simply represent 381:. You can help Knowledge by 330:10.1371/journal.pcbi.1003926 7: 46:to establish the subject's 10: 464: 360: 309:PLOS Computational Biology 448:Biological database stubs 230: 222: 217: 207: 202: 194: 180: 172: 159: 154: 142: 137: 43:sufficient sources exist 433:Protein classification 377:-related article is a 443:Protein superfamilies 281:convergent evolution 226:continuously updated 54:improve this article 375:Biological database 321:2014PLSCB..10E3926C 256:available from the 250:biological database 134: 132: 438:Protein databases 428:Protein structure 390: 389: 258:Protein Data Bank 238: 237: 130: 129: 122: 104: 16:(Redirected from 455: 411: 404: 397: 369: 362: 353: 352: 342: 332: 315:(12): e1003926. 300: 252:that classifies 181:Primary citation 135: 131: 125: 118: 114: 111: 105: 103: 62: 35: 27: 21: 463: 462: 458: 457: 456: 454: 453: 452: 418: 417: 416: 415: 358: 356: 301: 297: 293: 254:protein domains 231:Curation policy 161:Research center 149:Protein domains 144: 126: 115: 109: 106: 63: 61: 51: 36: 23: 22: 15: 12: 11: 5: 461: 451: 450: 445: 440: 435: 430: 414: 413: 406: 399: 391: 388: 387: 370: 355: 354: 294: 292: 289: 236: 235: 232: 228: 227: 224: 220: 219: 215: 214: 209: 205: 204: 200: 199: 196: 192: 191: 182: 178: 177: 174: 170: 169: 163: 157: 156: 152: 151: 146: 140: 139: 128: 127: 39: 37: 30: 9: 6: 4: 3: 2: 460: 449: 446: 444: 441: 439: 436: 434: 431: 429: 426: 425: 423: 412: 407: 405: 400: 398: 393: 392: 386: 384: 380: 376: 371: 368: 364: 363: 359: 350: 346: 341: 336: 331: 326: 322: 318: 314: 310: 306: 299: 295: 288: 286: 282: 278: 274: 270: 266: 261: 259: 255: 251: 247: 243: 233: 229: 225: 221: 218:Miscellaneous 216: 213: 210: 206: 201: 197: 193: 190: 186: 183: 179: 175: 171: 168: 165:Grishin Lab, 164: 162: 158: 153: 150: 147: 141: 136: 124: 121: 113: 110:February 2021 102: 99: 95: 92: 88: 85: 81: 78: 74: 71: –  70: 66: 65:Find sources: 59: 55: 49: 45: 44: 38: 34: 29: 28: 19: 383:expanding it 372: 357: 312: 308: 298: 262: 245: 241: 239: 195:Release date 116: 107: 97: 90: 83: 76: 64: 52:Please help 41: 263:Similar to 422:Categories 291:References 143:Data types 80:newspapers 48:notability 349:25474468 285:homology 189:25474468 145:captured 340:4256011 317:Bibcode 287:only. 248:) is a 223:Version 208:Website 173:Authors 155:Contact 138:Content 94:scholar 347:  337:  271:, and 203:Access 187:  96:  89:  82:  75:  67:  373:This 277:folds 101:JSTOR 87:books 379:stub 345:PMID 273:SCOP 269:CATH 265:Pfam 246:ECOD 240:The 198:2014 185:PMID 133:ECOD 73:news 18:ECOD 335:PMC 325:doi 56:by 424:: 343:. 333:. 323:. 313:10 311:. 307:. 267:, 410:e 403:t 396:v 385:. 351:. 327:: 319:: 244:( 123:) 117:( 112:) 108:( 98:· 91:· 84:· 77:· 50:. 20:)

Index

ECOD

sufficient sources exist
notability
improve this article
adding citations to reliable sources
"Evolutionary Classification of Protein Domains"
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newspapers
books
scholar
JSTOR
Learn how and when to remove this message
Protein domains
Research center
University of Texas Southwestern Medical Center
PMID
25474468
http://prodata.swmed.edu/ecod/
biological database
protein domains
Protein Data Bank
Pfam
CATH
SCOP
folds
convergent evolution
homology
"ECOD: an evolutionary classification of protein domains"
Bibcode

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