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Flavoprotein

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Jensen, Simon Bo; Thodberg, Sara; Parween, Shaheena; Moses, Matias E.; Hansen, Cecilie C.; Thomsen, Johannes; Sletfjerding, Magnus B.; Knudsen, Camilla; Del Giudice, Rita; Lund, Philip M.; Castaño, Patricia R. (2021-04-15).
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Daniel, R.A.; Errington, J. (1993). "Cloning, DNA Sequence, Functional Analysis and Transcriptional Regulation of the Genes Encoding Dipicolinic Acid Synthetase Required for Sporulation in Bacillus subtilis".
206:, wherein the FAD is buried deeply). About 5-10% of flavoproteins have a covalently linked FAD. Based on the available structural data, FAD-binding sites can be divided into more than 200 different types. 1006:
Clausen, Monika; Lamb, Christopher J.; Megnet, Roland; Doerner, Peter W. (1994). "PAD1 encodes phenylacrylic acid decarboxylase which confers resistance to cinnamic acid in Saccharomyces cerevisiae".
290:, but mixing of the two restored the enzyme activity. However, replacing the isolated pigment with riboflavin did not restore enzyme activity, despite being indistinguishable under 543:
Garma, Leonardo D.; Medina, Milagros; Juffer, André H. (2016-11-01). "Structure-based classification of FAD binding sites: A comparative study of structural alignment tools".
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90 flavoproteins are encoded in the human genome; about 84% require FAD and around 16% require FMN, whereas 5 proteins require both. Flavoproteins are mainly located in the
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provides A comprehensive collection of all flavo-proteins with known 3D-structure. It compares the protein structures to elucidate phylogenetic relationships.
488:"Genetic Control of Biosynthesis and Transport of Riboflavin and Flavin Nucleotides and Construction of Robust Biotechnological Producers" 338: 435:
Hanukoglu I (2017). "Conservation of the Enzyme-Coenzyme Interfaces in FAD and NADP Binding Adrenodoxin Reductase-A Ubiquitous Enzyme".
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that is involved in steroid hormone synthesis in vertebrate species, and has a ubiquitous distribution in metazoa and prokaryotes
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Christie, S. M. H.; Kenner, G. W.; Todd, A. R. (1954). "Nucleotides. Part XXV. A synthesis of flavin?adenine dinucleotide".
148: 1201: 245:. By the early 1930s, this same pigment had been isolated from a range of sources, and recognised as a component of the 923:"Purification and characterization of EpiD, a flavoprotein involved in the biosynthesis of the lantibiotic epidermin" 1186: 136: 807: 1120: 309: 195: 132: 1261: 1166: 1161: 330: 89: 856:"Biased cytochrome P450-mediated metabolism via small-molecule ligands binding P450 oxidoreductase" 392: 764:
Warburg, O.; Christian, W. (1938). "Isolation of the prosthetic group of the amino acid oxydase".
1196: 1181: 1176: 260: 199: 1156: 1113: 345: 1226: 1151: 707: 324: 295: 203: 191: 175:. These proteins are involved in a wide array of biological processes, including removal of 867: 444: 302: 275: 115: 8: 359: 176: 871: 745:
Theorell, H. (1935). "Preparation in pure state of the effect group of yellow enzymes".
448: 1206: 1078: 898: 855: 685: 623: 598: 576: 520: 487: 468: 253:, derived from the ribityl side chain and yellow colour of the conjugated ring system. 947: 922: 1266: 1221: 1216: 1082: 1070: 1062: 1023: 1019: 988: 952: 938: 903: 885: 835: 827: 823: 727: 677: 669: 664: 647: 628: 568: 560: 525: 507: 460: 282:
and a bright-yellow pigment. Neither apoprotein nor pigment alone could catalyse the
246: 123: 81: 1043:"Flavoprotein Photochemistry: Fundamental Processes and Photocatalytic Perspectives" 1042: 689: 580: 333:
that is a redox partner of cytochrome P450 proteins located in endoplasmic reticulum
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Flavoproteins were first mentioned in 1879, when they isolated as a bright-yellow
1247: 294:. This led to the discovery that the protein studied required not riboflavin but 69: 723: 880: 180: 614: 456: 1255: 1211: 1066: 1058: 889: 831: 673: 564: 511: 399: 264: 648:"Flavogenomics – a genomic and structural view of flavin-dependent proteins" 1171: 1074: 984: 907: 839: 808:"NADPH P450 oxidoreductase: Structure, function, and pathology of diseases" 731: 681: 632: 597:
Lienhart, Wolf-Dieter; Gudipati, Venugopal; Macheroux, Peter (2013-07-15).
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The flavoprotein family contains a diverse range of enzymes, including:
1191: 556: 250: 249:. Its structure was determined and reported in 1935 and given the name 222: 184: 172: 187:. The flavoproteins are some of the most-studied families of enzymes. 378: 352: 283: 279: 1243: 646:
Macheroux, Peter; Kappes, Barbara; Ealick, Steven E. (2011-08-01).
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protein, EpiD, which has been shown to be a flavoprotein that
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Zhuang, Bo; Liebl, Ursula; Vos, Marten H. (2022-05-05).
1005: 920: 708:"The chemical and biological versatility of riboflavin" 256:
The first evidence for the requirement of flavin as an
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This article incorporates text from the public domain
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Kupke, T; Stevanović, S; Sahl, H. G.; Götz, F (1992).
312:(FAD) as a second form of flavin utilised by enzymes. 645: 486:
Abbas, Charles A.; Sibirny, Andriy A. (2011-06-01).
430: 428: 267:and coworkers showed that a bright-yellow-coloured 782: 806:Pandey, Amit V.; FlĂĽck, Christa E. (2013-05-01). 545:Proteins: Structure, Function, and Bioinformatics 542: 425: 355:the removal of two reducing equivalents from the 1253: 763: 969: 202:. The flavin is generally tightly bound (as in 1040: 1121: 485: 241:from cow's milk. They were initially termed 999: 963: 914: 805: 370:of epidermin to form a --C==C-- double bond 1135: 1128: 1114: 492:Microbiology and Molecular Biology Reviews 27: 946: 897: 879: 663: 622: 519: 434: 398:), an enzyme which confers resistance to 274:, identified previously as essential for 744: 701: 699: 603:Archives of Biochemistry and Biophysics 1254: 705: 1109: 696: 592: 590: 1202:Methylenetetrahydrofolate reductase 1047:The Journal of Physical Chemistry B 13: 1098:The menu "science" of the program 179:contributing to oxidative stress, 14: 1278: 1092: 587: 939:10.1128/jb.174.16.5354-5361.1992 824:10.1016/j.pharmthera.2013.01.010 712:Biochemical Society Transactions 665:10.1111/j.1742-4658.2011.08202.x 389:Phenylacrylic acid decarboxylase 198:) as a prosthetic group or as a 1034: 846: 812:Pharmacology & Therapeutics 799: 785:Journal of the Chemical Society 190:Flavoproteins have either FMN ( 1187:Dihydrolipoamide dehydrogenase 776: 757: 738: 639: 536: 479: 437:Journal of Molecular Evolution 385:from dihydroxydipicolinic acid 33:the fmn binding protein athal3 1: 419: 308:led to the identification of 100:Available protein structures: 1020:10.1016/0378-1119(94)90363-8 973:Journal of Molecular Biology 298:to be catalytically active. 232: 7: 315: 310:flavin adenine dinucleotide 196:flavin adenine dinucleotide 10: 1283: 1237: 881:10.1038/s41467-021-22562-w 278:, could be separated into 1167:Butyryl CoA dehydrogenase 1162:Apoptosis-inducing factor 1147: 724:10.1042/0300-5127:0280283 615:10.1016/j.abb.2013.02.015 599:"The human flavoproteome" 457:10.1007/s00239-017-9821-9 331:Cytochrome P450 reductase 301:Similar experiments with 142: 122: 104: 99: 95: 75: 63: 51: 43: 38: 26: 21: 1059:10.1021/acs.jpcb.2c00969 766:Biochemische Zeitschrift 747:Biochemische Zeitschrift 415:, light-sensing proteins 1197:Methemoglobin reductase 1182:Cytokinin dehydrogenase 1177:Cytochrome b5 reductase 927:Journal of Bacteriology 1157:Acyl CoA dehydrogenase 985:10.1006/jmbi.1993.1403 1227:Thioredoxin reductase 1152:Acetolactate synthase 860:Nature Communications 504:10.1128/MMBR.00030-10 375:dipicolinate synthase 325:Adrenodoxin reductase 296:flavin mononucleotide 204:adrenodoxin reductase 192:flavin mononucleotide 793:10.1039/JR9540000046 276:cellular respiration 872:2021NatCo..12.2260J 449:2017JMolE..85..205H 306:-amino acid oxidase 1207:NADH dehydrogenase 706:Massey, V (2000). 557:10.1002/prot.25158 377:, an enzyme which 362:of the C-terminal 1235: 1234: 1222:Sarcosine oxidase 1217:Nitrate reductase 1053:(17): 3199–3207. 658:(15): 2625–2634. 551:(11): 1728–1747. 381:the formation of 305: 247:vitamin B complex 158: 157: 154: 153: 149:structure summary 1274: 1262:Protein families 1130: 1123: 1116: 1107: 1106: 1087: 1086: 1038: 1032: 1031: 1003: 997: 996: 967: 961: 960: 950: 918: 912: 911: 901: 883: 850: 844: 843: 803: 797: 796: 780: 774: 773: 761: 755: 754: 742: 736: 735: 703: 694: 693: 667: 643: 637: 636: 626: 594: 585: 584: 540: 534: 533: 523: 483: 477: 476: 432: 383:dipicolinic acid 303: 97: 96: 31: 19: 18: 1282: 1281: 1277: 1276: 1275: 1273: 1272: 1271: 1252: 1251: 1250: 1236: 1231: 1143: 1134: 1095: 1090: 1039: 1035: 1004: 1000: 968: 964: 933:(16): 5354–61. 919: 915: 851: 847: 804: 800: 781: 777: 762: 758: 743: 739: 704: 697: 644: 640: 595: 588: 541: 537: 484: 480: 433: 426: 422: 373:The B chain of 318: 235: 167:that contain a 34: 17: 12: 11: 5: 1280: 1270: 1269: 1264: 1233: 1232: 1230: 1229: 1224: 1219: 1214: 1209: 1204: 1199: 1194: 1189: 1184: 1179: 1174: 1169: 1164: 1159: 1154: 1148: 1145: 1144: 1133: 1132: 1125: 1118: 1110: 1104: 1103: 1094: 1093:External links 1091: 1089: 1088: 1033: 998: 962: 913: 845: 818:(2): 229–254. 798: 775: 756: 737: 695: 638: 609:(2): 150–162. 586: 535: 498:(2): 321–360. 478: 443:(5): 205–218. 423: 421: 418: 417: 416: 406: 386: 371: 335: 334: 328: 317: 314: 263:came in 1935. 234: 231: 181:photosynthesis 171:derivative of 156: 155: 152: 151: 146: 140: 139: 126: 120: 119: 109: 102: 101: 93: 92: 79: 73: 72: 67: 61: 60: 55: 49: 48: 45: 41: 40: 36: 35: 32: 24: 23: 16:Protein family 15: 9: 6: 4: 3: 2: 1279: 1268: 1265: 1263: 1260: 1259: 1257: 1249: 1245: 1241: 1228: 1225: 1223: 1220: 1218: 1215: 1213: 1212:NADPH oxidase 1210: 1208: 1205: 1203: 1200: 1198: 1195: 1193: 1190: 1188: 1185: 1183: 1180: 1178: 1175: 1173: 1170: 1168: 1165: 1163: 1160: 1158: 1155: 1153: 1150: 1149: 1146: 1142: 1141:flavoproteins 1138: 1131: 1126: 1124: 1119: 1117: 1112: 1111: 1108: 1101: 1097: 1096: 1084: 1080: 1076: 1072: 1068: 1064: 1060: 1056: 1052: 1048: 1044: 1037: 1029: 1025: 1021: 1017: 1014:(1): 107–12. 1013: 1009: 1002: 994: 990: 986: 982: 979:(2): 468–83. 978: 974: 966: 958: 954: 949: 944: 940: 936: 932: 928: 924: 917: 909: 905: 900: 895: 891: 887: 882: 877: 873: 869: 865: 861: 857: 849: 841: 837: 833: 829: 825: 821: 817: 813: 809: 802: 794: 790: 786: 779: 771: 767: 760: 752: 748: 741: 733: 729: 725: 721: 718:(4): 283–96. 717: 713: 709: 702: 700: 691: 687: 683: 679: 675: 671: 666: 661: 657: 653: 649: 642: 634: 630: 625: 620: 616: 612: 608: 604: 600: 593: 591: 582: 578: 574: 570: 566: 562: 558: 554: 550: 546: 539: 531: 527: 522: 517: 513: 509: 505: 501: 497: 493: 489: 482: 474: 470: 466: 462: 458: 454: 450: 446: 442: 438: 431: 429: 424: 414: 410: 407: 405: 401: 400:cinnamic acid 397: 394: 390: 387: 384: 380: 376: 372: 369: 365: 361: 358: 354: 351: 347: 343: 340: 337: 336: 332: 329: 326: 323: 322: 321: 313: 311: 307: 299: 297: 293: 289: 285: 281: 277: 273: 270: 266: 265:Hugo Theorell 262: 259: 254: 252: 248: 244: 240: 230: 228: 224: 220: 216: 212: 207: 205: 201: 197: 193: 188: 186: 182: 178: 174: 170: 166: 162: 161:Flavoproteins 150: 147: 145: 141: 138: 134: 130: 127: 125: 121: 117: 113: 110: 107: 103: 98: 94: 91: 87: 83: 80: 78: 74: 71: 68: 66: 62: 59: 56: 54: 50: 46: 42: 37: 30: 25: 20: 1172:Cryptochrome 1140: 1050: 1046: 1036: 1011: 1007: 1001: 976: 972: 965: 930: 926: 916: 863: 859: 848: 815: 811: 801: 784: 778: 769: 765: 759: 750: 746: 740: 715: 711: 655: 652:FEBS Journal 651: 641: 606: 602: 548: 544: 538: 495: 491: 481: 440: 436: 413:cryptochrome 363: 342:biosynthesis 319: 300: 292:spectroscopy 255: 242: 236: 215:transferases 211:mitochondria 208: 189: 169:nucleic acid 160: 159: 47:Flavoprotein 22:Flavoprotein 866:(1): 2260. 409:Phototropin 368:lanthionine 243:lactochrome 39:Identifiers 1256:Categories 1192:Flavodoxin 420:References 348:FMN. This 280:apoprotein 251:riboflavin 223:isomerases 194:) or FAD ( 185:DNA repair 173:riboflavin 112:structures 1248:IPR003382 1083:248296520 1067:1520-6106 890:2041-1723 832:0163-7258 787:: 46–52. 772:: 150–68. 753:: 344–46. 674:1742-4658 565:1097-0134 512:1092-2172 396:4.1.1.102 379:catalyses 353:catalyses 339:Epidermin 284:oxidation 233:Discovery 70:IPR003382 1267:Proteins 1244:InterPro 1075:35442696 908:33859207 840:23353702 732:10961912 690:22220250 682:21635694 633:23500531 581:26066208 573:27580869 530:21646432 465:29177972 357:cysteine 316:Examples 261:cofactor 200:cofactor 177:radicals 165:proteins 129:RCSB PDB 65:InterPro 1137:Protein 1028:8181743 993:8345520 957:1644762 899:8050233 868:Bibcode 624:3684772 521:3122625 473:7120148 445:Bibcode 360:residue 272:protein 239:pigment 227:ligases 58:PF02441 1081:  1073:  1065:  1026:  991:  955:  948:206373 945:  906:  896:  888:  838:  830:  730:  688:  680:  672:  631:  621:  579:  571:  563:  528:  518:  510:  471:  463:  350:enzyme 258:enzyme 219:lyases 183:, and 144:PDBsum 118:  108:  90:SUPFAM 44:Symbol 1100:STRAP 1079:S2CID 686:S2CID 577:S2CID 469:S2CID 404:yeast 346:binds 269:yeast 86:SCOPe 77:SCOP2 1242:and 1240:Pfam 1071:PMID 1063:ISSN 1024:PMID 1008:Gene 989:PMID 953:PMID 904:PMID 886:ISSN 836:PMID 828:ISSN 728:PMID 678:PMID 670:ISSN 629:PMID 569:PMID 561:ISSN 526:PMID 508:ISSN 461:PMID 411:and 364:meso 288:NADH 163:are 137:PDBj 133:PDBe 116:ECOD 106:Pfam 82:1e20 53:Pfam 1055:doi 1051:126 1016:doi 1012:142 981:doi 977:232 943:PMC 935:doi 931:174 894:PMC 876:doi 820:doi 816:138 789:doi 770:298 751:275 720:doi 660:doi 656:278 619:PMC 611:doi 607:535 553:doi 516:PMC 500:doi 453:doi 402:in 286:of 124:PDB 1258:: 1246:: 1139:: 1077:. 1069:. 1061:. 1049:. 1045:. 1022:. 1010:. 987:. 975:. 951:. 941:. 929:. 925:. 902:. 892:. 884:. 874:. 864:12 862:. 858:. 834:. 826:. 814:. 810:. 768:. 749:. 726:. 716:28 714:. 710:. 698:^ 684:. 676:. 668:. 654:. 650:. 627:. 617:. 605:. 601:. 589:^ 575:. 567:. 559:. 549:84 547:. 524:. 514:. 506:. 496:75 494:. 490:. 467:. 459:. 451:. 441:85 439:. 427:^ 393:EC 229:. 225:, 221:, 217:, 135:; 131:; 114:/ 88:/ 84:/ 1129:e 1122:t 1115:v 1085:. 1057:: 1030:. 1018:: 995:. 983:: 959:. 937:: 910:. 878:: 870:: 842:. 822:: 795:. 791:: 734:. 722:: 692:. 662:: 635:. 613:: 583:. 555:: 532:. 502:: 475:. 455:: 447:: 391:( 366:- 304:D

Index


Pfam
PF02441
InterPro
IPR003382
SCOP2
1e20
SCOPe
SUPFAM
Pfam
structures
ECOD
PDB
RCSB PDB
PDBe
PDBj
PDBsum
structure summary
proteins
nucleic acid
riboflavin
radicals
photosynthesis
DNA repair
flavin mononucleotide
flavin adenine dinucleotide
cofactor
adrenodoxin reductase
mitochondria
transferases

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