Knowledge

Building block (chemistry)

Source 📝

125:, or in order to realize the ideas of virtual screening and drug design are also called building blocks. To be practically useful for the modular drug or drug candidate assembly, the building blocks should be either mono-functionalised or possessing selectively chemically addressable functional groups, for example, orthogonally protected. Selection criteria applied to organic functionalized molecules to be included in the building block collections for medicinal chemistry are usually based on empirical rules aimed at 145:
collections prepared for fast and reliable construction of small-molecule sets of compounds (libraries) for biological screening became one of the major strategies for pharmaceutical industry involved in drug discovery; modular, usually one-step synthesis of compounds for biological screening from building blocks turned out to be in most cases faster and more reliable than multistep, even convergent syntheses of target compounds.
31: 180: 144:
The building block approach to drug discovery changed the landscape of chemical industry which supports medicinal chemistry. Major chemical suppliers for medicinal chemistry like Maybridge, Chembridge, Enamine adjusted their business correspondingly. By the end of the 1990th the use of building block
333:
A.J. Cairns; J.A. Perman; L. Wojtas; V.Ch. Kravtsov; M.H. Alkordi; M.Eddaoudi; M.J. Zaworotko (2008). "Supermolecular Building Blocks (SBBs) and Crystal Design: 12-Connected Open Frameworks Based on a Molecular Cubohemioctahedron".
979:
V.S. Yarmolchuk; O.V. Shishkin; V.S. Starova; O.A. Zaporozhets; O. Kravchuk; S. Zozulya; I.V. Komarov; P.K. Mykhailiuk (2013). "Synthesis and Characterization of β-Trifluoromethyl-Substituted Pyrrolidines".
782:
A.V. Tymtsunik; V.A. Bilenko; S.O. Kokhan; O.O. Grygorenko; D.M. Volochnyuk; I.V. Komarov (2012). "1-Alkyl-5-((di)alkylamino) Tetrazoles: Building Blocks for Peptide Surrogates".
533:
R.Breinbauer; I. R. Vetter; H.Waldmann (2002). "From Protein Domains to Drug Candidates—Natural Products as Guiding Principles in the Design and Synthesis of Compound Libraries".
168:
properties, therefore, the fluorine-substituted building blocks in drug design increase the probability of finding drug leads. Other examples include natural and unnatural
298:
O. K. Farha; C. D. Malliakas; M.G. Kanatzidis; J.T. Hupp (2010). "Control over Catenation in Metal−Organic Frameworks via Rational Design of the Organic Building Block".
747:
F.W. Goldberg; J.G. Kettle; T. Kogej; M.W.D. Perry; N.P. Tomkinson (2015). "Designing novel building blocks is an overlooked strategy to improve compound quality".
404:
G. Schneider; M.-L. Lee; M. Stahl; P. Schneider (2000). "De novo design of molecular architectures by evolutionary assembly of drug-derived building blocks".
222:
L. Zang; Y. Che; J.S. Moore (2008). "One-Dimensional Self-Assembly of Planar π-Conjugated Molecules: Adaptable Building Blocks for Organic Nanodevices".
498:
A. Kluczyk; T. Popek; T. Kiyota; P. de Macedo; P. Stefanowicz; C. Lazar; Y. Konishi (2002). "Drug Evolution: p-Aminobenzoic Acid as a Building Block".
121:
Organic functionalized molecules (reagents), carefully selected for the use in modular synthesis of novel drug candidates, in particular, by
109:. Of special interest for this purpose are the building blocks common to known biologically active compounds, in particular, known drugs, or 1069:
O.O. Grygorenko; D.S. Radchenko; D.M. Volochnyuk; A.A. Tolmachev; I.V. Komarov (2011). "Bicyclic Conformationally Restricted Diamines".
611:
A. Linusson; J. Gottfries; F. Lindgren; S. Wold (2000). "Statistical Molecular Design of Building Blocks for Combinatorial Chemistry".
17: 546: 683:"Conformationally restricted monoprotected diamines as scaffolds for design of biologically active compounds and peptidomimetics" 1032:"Conformationally rigid cyclic α-amino acids in the design of peptidomimetics, peptide models and biologically active compounds" 259:"Dendrimers and other dendritic macromolecules: From building blocks to functional assemblies in nanoscience and nanotechnology" 113:. There are algorithms for de novo design of molecular architectures by assembly of drug-derived virtual building blocks. 45:
which is used to describe a virtual molecular fragment or a real chemical compound the molecules of which possess reactive
61:
complexes. Using building blocks ensures strict control of what a final compound or a (supra)molecular construct will be.
160:-containing building blocks. Introduction of the fluorine into a molecule has been shown to be beneficial for its 681:
A.N. Shivanyuk; D.M. Volochnyuk; I.V. Komarov; K.G. Nazarenko; D.S. Radchenko; A. Kostyuk; A.A. Tomachev (2007).
817:"A MARKET GROWS, BLOCK BY BLOCK. Pharmaceutical building-block business attracts firms from ACROSS THE GLOBE". 887: 173: 133:
replacements of the molecular fragments in drug candidates could be made using analogous building blocks.
206: 58: 1031: 122: 54: 34:
Construction of complex molecular architectures is easily possible using simple building blocks
682: 1117: 1043: 910: 413: 270: 1068: 8: 646:
G. Schneider; H.-J. Böhm (2002). "Virtual screening and fast automated docking methods".
568:
G. Schneider; U. Fechner (2005). "Computer-based de novo design of drug-like molecules".
70: 1121: 1047: 978: 914: 417: 274: 156:
Typical examples of building block collections for medicinal chemistry are libraries of
1159: 729: 680: 593: 480: 437: 105:, addressing the desire to have controllable molecular morphologies that interact with 659: 172:
libraries, collections of conformationally constrained bifunctionalized compounds and
49:. Building blocks are used for bottom-up modular assembly of molecular architectures: 1135: 1086: 961: 926: 799: 764: 721: 663: 628: 585: 550: 515: 472: 429: 386: 351: 315: 239: 138: 106: 102: 1055: 781: 484: 441: 1125: 1078: 1051: 1012: 989: 953: 918: 826: 791: 756: 733: 713: 655: 620: 597: 577: 542: 507: 464: 421: 378: 343: 307: 278: 231: 165: 161: 46: 1016: 922: 297: 760: 110: 1029: 382: 94: 82: 830: 425: 73:, the term defines either imaginable, virtual molecular fragments or chemical 1153: 944:
M Schlosser (2006). "CF3-Bearing Aromatic and Heterocyclic Building Blocks".
511: 332: 746: 1139: 1090: 993: 965: 957: 930: 803: 768: 725: 667: 632: 589: 554: 519: 476: 455:
J. Wang; T. Hou (2010). "Drug and Drug Candidate Building Block Analysis".
433: 390: 355: 319: 243: 126: 50: 547:
10.1002/1521-3773(20020816)41:16<2878::AID-ANIE2878>3.0.CO;2-B
610: 403: 369:
R.S. Tu; M. Tirrell (2004). "Bottom-up design of biomimetic assemblies".
184: 130: 98: 30: 497: 283: 258: 169: 1082: 858: 795: 717: 624: 468: 347: 311: 235: 187:
and two building blocks BB1 and BB2 from which it could be synthesized
42: 1130: 1105: 581: 157: 532: 74: 704:
I. Muegge (2003). "Selection criteria for drug-like compounds".
179: 1030:
I.V. Komarov; A.O. Grigorenko; A.V. Turov; V.P. Khilya (2004).
901:
J. Drews (2000). "Drug Discovery: A Historical Perspective".
844: 78: 872: 64: 136: 221: 116: 845:"Maybridge building blocks and reactive intermediates" 645: 567: 1009:
Fluorine in Medicinal Chemistry and Chemical Biology
1106:"Organic chemistry: Molecular diversity by design" 368: 1151: 208:Organic Building Blocks of the Chemical Industry 85:might be constructed or synthetically prepared. 1103: 256: 454: 943: 204: 88: 1129: 703: 282: 129:properties of the final drug candidates. 1006: 900: 178: 29: 946:Angewandte Chemie International Edition 535:Angewandte Chemie International Edition 65:Building blocks for medicinal chemistry 14: 1152: 888:"Good Suppliers – And The Other Guys" 885: 873:"Building Blocks for Drug Discovery" 117:Chemical reagents as building blocks 93:Virtual building blocks are used in 24: 211:. New York: John Wiley & Sons. 25: 1171: 148:There are online web-resources. 57:, organic molecular constructs, 1097: 1062: 1056:10.1070/rc2004v073n08abeh000912 1023: 1000: 972: 937: 894: 879: 865: 851: 837: 810: 775: 740: 697: 674: 639: 604: 561: 526: 491: 448: 397: 362: 326: 291: 250: 215: 198: 13: 1: 1017:10.1002/9781444312096.fmatter 923:10.1126/science.287.5460.1960 660:10.1016/S1359-6446(01)02091-8 191: 859:"Building Blocks: Key Facts" 761:10.1016/j.drudis.2014.09.023 687:Chimica Oggi/Chemistry Today 263:J. Polym. Sci. A Polym. Chem 176:building block collections. 7: 151: 10: 1176: 886:Lowe, Derek (2010-03-18). 383:10.1016/j.addr.2003.10.047 831:10.1021/cen-v089n018.p016 406:J. Comput.-Aided Mol. Des 18:Molecular building blocks 1036:Russian Chemical Reviews 1011:. Blackwell Publishing. 512:10.2174/0929867023368872 55:metal-organic frameworks 1104:S.L. Schreiber (2009). 426:10.1023/A:1008184403558 257:J.M.J. Fréchet (2003). 123:combinatorial chemistry 89:Virtual building blocks 994:10.1002/ejoc.201300121 958:10.1002/anie.200600449 188: 183:An anti-diabetic drug 35: 570:Nat. Rev. Drug Discov 182: 33: 749:Drug Discovery Today 648:Drug Discovery Today 371:Adv. Drug Deliv. Rev 205:H.H. Szmant (1989). 137:Building blocks and 1122:2009Natur.457..153S 1048:2004RuCRv..73..785K 915:2000Sci...287.1960D 909:(5460): 1960–1964. 825:(18): 16–18. 2011. 457:J. Chem. Inf. Model 418:2000JCAMD..14..487S 275:2003JPoSA..41.3713F 71:medicinal chemistry 284:10.1002/pola.10952 189: 174:diversity-oriented 107:biological targets 36: 1116:(7226): 153–154. 1083:10.1021/cr100352k 1007:I. Ojima (2009). 988:(15): 3086–3093. 982:Eur. J. Org. Chem 952:(33): 5432–5446. 796:10.1021/jo2022235 718:10.1002/med.10041 625:10.1021/jm991118x 541:(16): 2878–2890. 506:(21): 1871–1892. 469:10.1021/ci900398f 377:(11): 1537–1563. 348:10.1021/ja078060t 312:10.1021/ja909519e 269:(23): 3713–3725. 236:10.1021/ar800030w 230:(12): 1596–1608. 139:chemical industry 103:virtual screening 47:functional groups 27:Term in chemistry 16:(Redirected from 1167: 1144: 1143: 1133: 1101: 1095: 1094: 1077:(9): 5506–5568. 1066: 1060: 1059: 1027: 1021: 1020: 1004: 998: 997: 976: 970: 969: 941: 935: 934: 898: 892: 891: 883: 877: 876: 869: 863: 862: 855: 849: 848: 841: 835: 834: 814: 808: 807: 790:(2): 1174–1180. 779: 773: 772: 744: 738: 737: 701: 695: 694: 678: 672: 671: 643: 637: 636: 619:(7): 1320–1328. 608: 602: 601: 565: 559: 558: 530: 524: 523: 495: 489: 488: 452: 446: 445: 401: 395: 394: 366: 360: 359: 342:(5): 1560–1561. 336:J. Am. Chem. Soc 330: 324: 323: 300:J. Am. Chem. Soc 295: 289: 288: 286: 254: 248: 247: 219: 213: 212: 202: 111:natural products 21: 1175: 1174: 1170: 1169: 1168: 1166: 1165: 1164: 1150: 1149: 1148: 1147: 1131:10.1038/457153a 1102: 1098: 1067: 1063: 1028: 1024: 1005: 1001: 977: 973: 942: 938: 899: 895: 884: 880: 871: 870: 866: 857: 856: 852: 843: 842: 838: 819:Chem. Eng. News 816: 815: 811: 780: 776: 745: 741: 702: 698: 679: 675: 644: 640: 609: 605: 582:10.1038/nrd1799 566: 562: 531: 527: 500:Curr. Med. Chem 496: 492: 453: 449: 402: 398: 367: 363: 331: 327: 296: 292: 255: 251: 220: 216: 203: 199: 194: 166:pharmacodynamic 162:pharmacokinetic 154: 142: 119: 91: 83:drug candidates 67: 59:supra-molecular 28: 23: 22: 15: 12: 11: 5: 1173: 1163: 1162: 1146: 1145: 1096: 1061: 1042:(8): 785–810. 1022: 999: 971: 936: 893: 878: 864: 850: 836: 809: 774: 739: 712:(3): 302–321. 696: 673: 638: 603: 576:(8): 649–663. 560: 525: 490: 447: 412:(5): 487–494. 396: 361: 325: 306:(3): 950–952. 290: 249: 224:Acc. Chem. Res 214: 196: 195: 193: 190: 153: 150: 141: 135: 118: 115: 95:drug discovery 90: 87: 66: 63: 51:nano-particles 39:Building block 26: 9: 6: 4: 3: 2: 1172: 1161: 1158: 1157: 1155: 1141: 1137: 1132: 1127: 1123: 1119: 1115: 1111: 1107: 1100: 1092: 1088: 1084: 1080: 1076: 1072: 1065: 1057: 1053: 1049: 1045: 1041: 1037: 1033: 1026: 1018: 1014: 1010: 1003: 995: 991: 987: 983: 975: 967: 963: 959: 955: 951: 947: 940: 932: 928: 924: 920: 916: 912: 908: 904: 897: 889: 882: 874: 868: 860: 854: 846: 840: 832: 828: 824: 820: 813: 805: 801: 797: 793: 789: 785: 778: 770: 766: 762: 758: 754: 750: 743: 735: 731: 727: 723: 719: 715: 711: 707: 706:Med. Res. Rev 700: 692: 688: 684: 677: 669: 665: 661: 657: 653: 649: 642: 634: 630: 626: 622: 618: 614: 607: 599: 595: 591: 587: 583: 579: 575: 571: 564: 556: 552: 548: 544: 540: 536: 529: 521: 517: 513: 509: 505: 501: 494: 486: 482: 478: 474: 470: 466: 462: 458: 451: 443: 439: 435: 431: 427: 423: 419: 415: 411: 407: 400: 392: 388: 384: 380: 376: 372: 365: 357: 353: 349: 345: 341: 337: 329: 321: 317: 313: 309: 305: 301: 294: 285: 280: 276: 272: 268: 264: 260: 253: 245: 241: 237: 233: 229: 225: 218: 210: 209: 201: 197: 186: 181: 177: 175: 171: 167: 163: 159: 149: 146: 140: 134: 132: 128: 124: 114: 112: 108: 104: 100: 96: 86: 84: 80: 76: 72: 62: 60: 56: 52: 48: 44: 41:is a term in 40: 32: 19: 1113: 1109: 1099: 1074: 1070: 1064: 1039: 1035: 1025: 1008: 1002: 985: 981: 974: 949: 945: 939: 906: 902: 896: 881: 867: 853: 839: 822: 818: 812: 787: 784:J. Org. Chem 783: 777: 755:(1): 11–17. 752: 748: 742: 709: 705: 699: 690: 686: 676: 654:(1): 64–70. 651: 647: 641: 616: 613:J. Med. Chem 612: 606: 573: 569: 563: 538: 534: 528: 503: 499: 493: 463:(1): 55–67. 460: 456: 450: 409: 405: 399: 374: 370: 364: 339: 335: 328: 303: 299: 293: 266: 262: 252: 227: 223: 217: 207: 200: 155: 147: 143: 131:Bioisosteric 120: 92: 68: 38: 37: 693:(3): 12–13. 185:Saxagliptin 99:drug design 77:from which 192:References 170:amino acid 1160:Chemistry 1071:Chem. Rev 127:drug-like 43:chemistry 1154:Category 1140:19129834 1091:21711015 966:16847982 931:10720314 804:22171684 769:25281855 726:12647312 668:11790605 633:10753469 590:16056391 555:12203413 520:12369873 485:24607262 477:20020714 442:12380240 434:10896320 391:15350288 356:18186639 320:20039671 244:18616298 158:fluorine 152:Examples 75:reagents 1118:Bibcode 1044:Bibcode 911:Bibcode 903:Science 734:6236984 598:2549851 414:Bibcode 271:Bibcode 1138:  1110:Nature 1089:  964:  929:  802:  767:  732:  724:  666:  631:  596:  588:  553:  518:  483:  475:  440:  432:  389:  354:  318:  242:  730:S2CID 594:S2CID 481:S2CID 438:S2CID 79:drugs 1136:PMID 1087:PMID 986:2013 962:PMID 927:PMID 800:PMID 765:PMID 722:PMID 664:PMID 629:PMID 586:PMID 551:PMID 516:PMID 473:PMID 430:PMID 387:PMID 352:PMID 316:PMID 240:PMID 164:and 101:and 97:for 1126:doi 1114:457 1079:doi 1075:111 1052:doi 1013:doi 990:doi 954:doi 919:doi 907:287 827:doi 792:doi 757:doi 714:doi 656:doi 621:doi 578:doi 543:doi 508:doi 465:doi 422:doi 379:doi 344:doi 340:130 308:doi 304:132 279:doi 232:doi 81:or 69:In 1156:: 1134:. 1124:. 1112:. 1108:. 1085:. 1073:. 1050:. 1040:73 1038:. 1034:. 984:. 960:. 950:45 948:. 925:. 917:. 905:. 823:89 821:. 798:. 788:77 786:. 763:. 753:20 751:. 728:. 720:. 710:23 708:. 691:25 689:. 685:. 662:. 650:. 627:. 617:43 615:. 592:. 584:. 572:. 549:. 539:41 537:. 514:. 502:. 479:. 471:. 461:50 459:. 436:. 428:. 420:. 410:14 408:. 385:. 375:56 373:. 350:. 338:. 314:. 302:. 277:. 267:41 265:. 261:. 238:. 228:41 226:. 53:, 1142:. 1128:: 1120:: 1093:. 1081:: 1058:. 1054:: 1046:: 1019:. 1015:: 996:. 992:: 968:. 956:: 933:. 921:: 913:: 890:. 875:. 861:. 847:. 833:. 829:: 806:. 794:: 771:. 759:: 736:. 716:: 670:. 658:: 652:7 635:. 623:: 600:. 580:: 574:4 557:. 545:: 522:. 510:: 504:9 487:. 467:: 444:. 424:: 416:: 393:. 381:: 358:. 346:: 322:. 310:: 287:. 281:: 273:: 246:. 234:: 20:)

Index

Molecular building blocks

chemistry
functional groups
nano-particles
metal-organic frameworks
supra-molecular
medicinal chemistry
reagents
drugs
drug candidates
drug discovery
drug design
virtual screening
biological targets
natural products
combinatorial chemistry
drug-like
Bioisosteric
chemical industry
fluorine
pharmacokinetic
pharmacodynamic
amino acid
diversity-oriented

Saxagliptin
Organic Building Blocks of the Chemical Industry
doi
10.1021/ar800030w

Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.