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Monte Carlo molecular modeling

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58:. The avoidance of dynamics restricts the method to studies of static quantities only, but the freedom to choose moves makes the method very flexible. These moves must only satisfy a basic condition of 123: 82:
A range of software packages have been developed specifically for the use of the Metropolis Monte Carlo method on molecular simulations. These include:
128: 72:, lack a dynamical description and are only defined by an energy prescription; for these the Monte Carlo approach is the only one feasible. 54:
for a system from a previous one. According to its stochastic nature, this new state is accepted at random. Each trial usually counts as a
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rather than molecular dynamics. Instead of trying to reproduce the dynamics of a system, it generates states according to appropriate
118: 40: 68:, a stronger condition, is usually imposed when designing new algorithms. An additional advantage is that some systems, such as the 145: 290: 271: 252: 28: 75:
The great success of this method in statistical mechanics has led to various generalizations such as the method of
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https://web.archive.org/web/20220126175020/http://cmm.cit.nih.gov/intro_simulation/node25.html
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for optimization, in which a fictitious temperature is introduced and then gradually lowered.
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to molecular systems. It is therefore also a particular subset of the more general
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to molecular problems. These problems can also be modelled by the
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Monte Carlo Simulation in Statistical Physics. An Introduction
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in order for the equilibrium to be properly described, but
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method. The difference is that this approach relies on
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List of software for Monte Carlo molecular modeling
240: 301: 239:Allen, M.P. & Tildesley, D.J. (1987). 129:Software for molecular mechanics modeling 119:Monte Carlo method in statistical physics 41:Monte Carlo method in statistical physics 281:Binder, K. & Heermann, D.W. (2002). 302: 35:. Thus, it is the application of the 262:Frenkel, D. & Smit, B. (2001). 13: 264:Understanding Molecular Simulation 50:procedure in order to determine a 14: 336: 139: 37:Metropolis Monte Carlo simulation 29:equilibrium statistical mechanics 17:Monte Carlo molecular modelling 243:Computer Simulation of Liquids 209: 198: 180: 169: 158: 1: 176:BOSS & MCPro Distribution 165:BOSS & MCPro Distribution 151: 7: 247:. Oxford University Press. 107: 10: 341: 285:(4th ed.). Springer. 134:Bond fluctuation model 33:Boltzmann distribution 19:is the application of 315:Theoretical chemistry 320:Monte Carlo methods 310:Molecular modelling 114:Quantum Monte Carlo 77:simulated annealing 21:Monte Carlo methods 266:. Academic Press. 192:2016-04-15 at the 25:molecular dynamics 325:Stochastic models 332: 296: 277: 258: 246: 231: 230: 228: 227: 213: 207: 202: 196: 184: 178: 173: 167: 162: 65:detailed balance 340: 339: 335: 334: 333: 331: 330: 329: 300: 299: 293: 274: 255: 235: 234: 225: 223: 215: 214: 210: 205:ProtoMS website 203: 199: 194:Wayback Machine 185: 181: 174: 170: 163: 159: 154: 142: 110: 12: 11: 5: 338: 328: 327: 322: 317: 312: 298: 297: 291: 278: 272: 259: 253: 233: 232: 208: 197: 179: 168: 156: 155: 153: 150: 149: 148: 141: 140:External links 138: 137: 136: 131: 126: 121: 116: 109: 106: 105: 104: 101: 98: 95: 92: 87: 9: 6: 4: 3: 2: 337: 326: 323: 321: 318: 316: 313: 311: 308: 307: 305: 294: 292:3-540-43221-3 288: 284: 279: 275: 273:0-12-267351-4 269: 265: 260: 256: 254:0-19-855645-4 250: 245: 244: 237: 236: 222: 218: 212: 206: 201: 195: 191: 188: 183: 177: 172: 166: 161: 157: 147: 144: 143: 135: 132: 130: 127: 125: 122: 120: 117: 115: 112: 111: 102: 99: 96: 93: 91: 88: 85: 84: 83: 80: 78: 73: 71: 67: 66: 61: 57: 53: 49: 46:It employs a 44: 42: 38: 34: 30: 26: 22: 18: 282: 263: 242: 224:. Retrieved 220: 217:"Faunus Mk2" 211: 200: 187:Sire website 182: 171: 160: 81: 74: 63: 59: 55: 51: 48:Markov chain 45: 36: 16: 15: 70:Ising model 304:Categories 226:2020-07-23 152:References 52:new state 190:Archived 108:See also 100:ProtoMS 60:balance 289:  270:  251:  221:Faunus 103:Faunus 94:MCPro 287:ISBN 268:ISBN 249:ISBN 97:Sire 90:CP2K 86:BOSS 56:move 306:: 219:. 43:. 295:. 276:. 257:. 229:.

Index

Monte Carlo methods
molecular dynamics
equilibrium statistical mechanics
Boltzmann distribution
Monte Carlo method in statistical physics
Markov chain
detailed balance
Ising model
simulated annealing
CP2K
Quantum Monte Carlo
Monte Carlo method in statistical physics
List of software for Monte Carlo molecular modeling
Software for molecular mechanics modeling
Bond fluctuation model
https://web.archive.org/web/20220126175020/http://cmm.cit.nih.gov/intro_simulation/node25.html
BOSS & MCPro Distribution
BOSS & MCPro Distribution
Sire website
Archived
Wayback Machine
ProtoMS website
"Faunus Mk2"
Computer Simulation of Liquids
ISBN
0-19-855645-4
ISBN
0-12-267351-4
ISBN
3-540-43221-3

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