Knowledge

Phycobilisome

Source ๐Ÿ“

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response to light color. In green light the distal portions of the rods are made of red colored phycoerythrin, which absorbs green light better. In red light, this is replaced by blue colored phycocyanin, which absorbs red light better. This reversible process is known as complementary chromatic adaptation. It is the component of photosynthetic system of cyanobacteria, as a particle with which various structures are linked (i.e. thylakoid membrane, etc.).
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The phycobiliproteins themselves show little sequence evolution due to their highly constrained function (absorption and transfer of specific wavelengths). In some species of cyanobacteria, when both phycocyanin and phycoerythrin is present, the phycobilisome can undergo significant restructuring as
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There are many variations to the general phycobilisome structure. Their shape can be hemidiscoidal (in cyanobacteria) or hemiellipsoidal (in red algae). Species lacking phycoerythrin have at least two disks of phycocyanin per rod, which is sufficient for maximum photosynthesis.
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of the photosystem II. In this way, the cells take advantage of the available wavelengths of light (in the 500โ€“650 nm range), which are inaccessible to chlorophyll, and utilize their energy for photosynthesis. This is particularly advantageous deeper in the
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Each phycobiliprotein has a specific absorption and fluorescence emission maximum in the visible range of light. Therefore, their presence and the particular arrangement within the phycobilisomes allow absorption and unidirectional transfer of light energy to
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Zoha SJ, Ramnarain S, Morseman JP, Moss MW, Allnutt FT, Rogers YH, Harvey B (1999). "PBXL Fluorescent Dyes for Ultrasensitive Direct Detection".
1044: 317: 863: 347:, providing a larger signal per binding event. This property allows the detection of low-level target molecules or rare events. 76: 291:
The geometrical arrangement of a phycobilisome is very elegant in an antenna-like assembly. It results in 95% efficiency of
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Stadnichuk IN, Kusnetsov VV (2021). "Endosymbiotic Origin of Chloroplasts in Plant Cells' Evolution".
932: 89: 693:"MicroPlate Detection comparison between SureLightยฎP-3L, other fluorophores and enzymatic detection" 1739: 830: 164: 2236: 1979: 849: 2176: 2115: 2054: 1768: 945: 927: 2231: 2226: 2136: 2127: 1713: 981: 936: 435:"Structural organization of an intact phycobilisome and its association with photosystem II" 785:"Structural insight into the mechanism of energy transfer in cyanobacterial phycobilisomes" 267:. The spectral properties of a given phycobilin are influenced by its protein environment. 115: 1839: 826: 223:, and their associated linker polypeptides. Each phycobilisome consists of a core made of 8: 2246: 2064: 392:"Core and rod structures of a thermophilic cyanobacterial light-harvesting phycobilisome" 582: 1313: 1022: 811: 784: 674: 634: 609: 546: 521: 502: 459: 434: 418: 391: 236: 743: 522:"The phycobilisomes: an early requisite for efficient photosynthesis in cyanobacteria" 2110: 2069: 1422: 1135: 986: 747: 639: 605: 586: 551: 506: 464: 256: 123: 81: 678: 390:
Kawakami K, Hamaguchi T, Hirose Y, Kosumi D, Miyata M, Kamiya N, Yonekura K (2022).
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Phycobilisome versus cyanine dye detection capabilities in Western blot application.
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Excitation and emission spectra of a phycobilisome from a blue-green alga.
339:. Some phycobilisomes have an absorption and emission profile similar to 239:. The spectral property of phycobiliproteins are mainly dictated by their 85: 28: 2191: 2166: 2154: 1969: 1923: 1724: 1691: 1671: 1592: 1505: 1376: 1344: 1282: 1272: 1207: 1182: 1130: 899: 336: 277: 228: 216: 192: 180: 2205: 2200: 2181: 2171: 2149: 1805: 1729: 1549: 1520: 1448: 1427: 1298: 1186: 1140: 1082: 976: 971: 450: 248: 783:
Zheng L, Zheng Z, Li X, Wang G, Zhang K, Wei P, Zhao J, Gao N (2021).
227:, from which several outwardly oriented rods made of stacked disks of 2186: 2059: 2049: 1913: 1895: 1870: 1800: 1652: 1632: 1618: 1597: 1525: 1405: 1308: 1287: 1233: 1125: 1104: 212: 184: 2079: 2074: 1986: 1951: 1880: 1865: 1855: 1734: 1657: 1608: 1572: 1539: 1453: 1365: 1262: 1217: 1097: 1077: 1011: 961: 64: 1996: 1515: 1469: 1108: 1061: 16:
Light-energy harvesting structure in cyanobacteria and red algae
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Glazer AN (June 1985). "Light harvesting by phycobilisomes".
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Chang L, Liu X, Li Y, Liu CC, Yang F, Zhao J, Sui SF (2015).
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Telford WG, Moss MW, Morseman JP, Allnutt FC (August 2001).
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Annual Review of Biophysics and Biophysical Chemistry
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Singh NK, Sonani RR, Rastogi RP, Madamwar D (2015).
871: 484: 33:The layout of protein subunits in a phycobilisome. 1679: 167:that transmit the energy of harvested photons to 2218: 782: 480: 478: 207:Phycobilisomes are protein complexes (up to 600 604:Lea-Smith DJ, Bombelli P, Dennis JS, Scott SA, 718: 716: 1640: 1038: 857: 837:Columbia Biosciences - Phycobilisome Resource 475: 432: 702:. Columbia Biosciences. 2010. Archived from 713: 1045: 1031: 864: 850: 562: 298: 27: 1547: 829:at the U.S. National Library of Medicine 810: 800: 633: 545: 458: 417: 407: 2219: 568: 215:membranes. They are made of stacks of 1026: 845: 202: 583:10.1146/annurev.bb.14.060185.000403 487:Russian Journal of Plant Physiology 13: 776: 14: 2258: 820: 732:Journal of Immunological Methods 364: 352: 311: 1792:Membranous/thalloid/foliaceous 685: 650: 513: 426: 383: 316:Phycobilisomes can be used in 1: 1762:Tetrasporal/capsal/palmelloid 744:10.1016/s0022-1759(01)00367-2 376: 100:Available protein structures: 7: 942:Peripheral membrane protein 270: 10: 2263: 933:Integral membrane proteins 802:10.1038/s41467-021-25813-y 409:10.1038/s41467-022-30962-9 2101: 2035: 1960: 1937: 1904: 1837: 1711: 1704: 1670: 1631: 1606: 1580: 1571: 1538: 1503: 1467: 1436: 1413: 1404: 1374: 1353: 1335: 1326: 1296: 1270: 1261: 1231: 1205: 1170: 1161: 1154: 1068: 954: 918: 880: 499:10.1134/S1021443721010179 165:light-harvesting antennae 142: 122: 104: 99: 95: 75: 63: 51: 43: 38: 26: 21: 2242:Prokaryotic cell anatomy 1083:Mastigophora/Flagellates 831:Medical Subject Headings 2121:Baas-Becking hypothesis 977:Lipid raft/microdomains 671:10.1023/A:1022503600141 659:Journal of Fluorescence 608:, Howe CJ (June 2014). 299:Evolution and diversity 2116:Microbial biogeography 982:Membrane contact sites 946:Lipid-anchored protein 928:Membrane glycoproteins 538:10.17179/excli2014-723 1136:Fungus-like organisms 937:transmembrane protein 789:Nature Communications 626:10.1104/pp.114.237206 396:Nature Communications 22:Phycobilisome protein 1851:Simple cell membrane 1787:Pseudoparenchymatous 1775:Filamentous/trichal/ 1759:Colonial flagellated 1692:Collar of microvilli 962:Caveolae/Coated pits 700:Technical Bulletin 3 2065:Contractile vacuole 2016:Meiosis in protists 1997:Mitosis in protists 1975:Multinucleate cells 1197:Flagellar apparatus 1146:Ambiregnal protists 1088:Sarcodina/Amoeboids 318:prompt fluorescence 243:, which are linear 1896:Periplast/pellicle 1619:Periplast/pellicle 1559:Cruciform division 987:Membrane nanotubes 872:Structures of the 451:10.1038/cr.2015.59 323:2018-03-18 at the 237:phycoerythrocyanin 2214: 2213: 2111:Microbial ecology 2097: 2096: 2093: 2092: 2070:Eyespot apparatus 1700: 1699: 1682:Choanoflagellates 1666: 1665: 1627: 1626: 1567: 1566: 1534: 1533: 1400: 1399: 1322: 1321: 1257: 1256: 1020: 1019: 920:Membrane proteins 709:on 18 March 2018. 257:phycoerythrobilin 241:prosthetic groups 231:and (if present) 221:phycobiliproteins 203:General structure 158: 157: 154: 153: 149:structure summary 2254: 2085:Mastigont system 2038: 1963: 1940: 1929:Gliding motility 1907: 1844: 1789:/plektenchymatic 1745:Amoeboflagellate 1718: 1709: 1708: 1685: 1677: 1676: 1646: 1638: 1637: 1612: 1586: 1578: 1577: 1552: 1545: 1544: 1509: 1473: 1442: 1416: 1411: 1410: 1380: 1359: 1338: 1333: 1332: 1302: 1276: 1268: 1267: 1237: 1211: 1175: 1168: 1167: 1159: 1158: 1047: 1040: 1033: 1024: 1023: 1002:Nuclear envelope 997:Nodes of Ranvier 866: 859: 852: 843: 842: 816: 815:. Art. No. 5497. 814: 804: 770: 769: 767: 766: 760: 754:. Archived from 729: 720: 711: 710: 708: 697: 689: 683: 682: 654: 648: 647: 637: 614:Plant Physiology 601: 595: 594: 566: 560: 559: 549: 517: 511: 510: 482: 473: 472: 462: 430: 424: 423: 422:. Art. No. 3389. 421: 411: 387: 368: 356: 333:Western blotting 217:chromophorylated 97: 96: 31: 19: 18: 2262: 2261: 2257: 2256: 2255: 2253: 2252: 2251: 2217: 2216: 2215: 2210: 2103: 2089: 2036: 2031: 1961: 1956: 1938: 1933: 1905: 1900: 1841: 1838: 1833: 1715: 1712: 1696: 1680: 1662: 1641: 1623: 1607: 1602: 1581: 1563: 1548: 1530: 1504: 1499: 1468: 1463: 1439:Dinoflagellates 1437: 1432: 1414: 1396: 1375: 1370: 1354: 1349: 1336: 1318: 1297: 1292: 1271: 1253: 1232: 1227: 1206: 1201: 1171: 1150: 1071:classifications 1070: 1064: 1051: 1021: 1016: 950: 914: 882:Membrane lipids 876: 870: 823: 779: 777:Further reading 774: 773: 764: 762: 758: 727: 721: 714: 706: 695: 691: 690: 686: 655: 651: 602: 598: 567: 563: 518: 514: 483: 476: 431: 427: 388: 384: 379: 372: 369: 360: 357: 325:Wayback Machine 314: 301: 293:energy transfer 273: 265:phycobiliviolin 253:phycocyanobilin 225:allophycocyanin 205: 34: 17: 12: 11: 5: 2260: 2250: 2249: 2244: 2239: 2237:Photosynthesis 2234: 2229: 2212: 2211: 2209: 2208: 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1589: 1587: 1583:Kinetoplastids 1575: 1569: 1568: 1565: 1564: 1562: 1561: 1555: 1553: 1542: 1536: 1535: 1532: 1531: 1529: 1528: 1523: 1518: 1512: 1510: 1501: 1500: 1498: 1497: 1492: 1487: 1482: 1476: 1474: 1465: 1464: 1462: 1461: 1456: 1451: 1445: 1443: 1434: 1433: 1431: 1430: 1425: 1419: 1417: 1408: 1402: 1401: 1398: 1397: 1395: 1394: 1389: 1383: 1381: 1372: 1371: 1369: 1368: 1362: 1360: 1351: 1350: 1348: 1347: 1341: 1339: 1330: 1324: 1323: 1320: 1319: 1317: 1316: 1311: 1305: 1303: 1294: 1293: 1291: 1290: 1285: 1279: 1277: 1265: 1259: 1258: 1255: 1254: 1252: 1251: 1249:Phycobilisomes 1246: 1244:Pit connection 1240: 1238: 1229: 1228: 1226: 1225: 1223:Phycobilisomes 1220: 1214: 1212: 1203: 1202: 1200: 1199: 1194: 1189: 1178: 1176: 1173:Chloroplastida 1165: 1163:Archaeplastida 1156: 1152: 1151: 1149: 1148: 1143: 1138: 1133: 1128: 1123: 1118: 1117: 1116: 1111: 1102: 1101: 1100: 1095: 1085: 1074: 1072: 1066: 1065: 1050: 1049: 1042: 1035: 1027: 1018: 1017: 1015: 1014: 1009: 1007:Phycobilisomes 1004: 999: 994: 989: 984: 979: 974: 969: 967:Cell junctions 964: 958: 956: 952: 951: 949: 948: 939: 930: 924: 922: 916: 915: 913: 912: 907: 902: 897: 892: 886: 884: 878: 877: 869: 868: 861: 854: 846: 840: 839: 834: 827:Phycobilisomes 822: 821:External links 819: 818: 817: 778: 775: 772: 771: 738:(1โ€“2): 13โ€“30. 712: 684: 665:(3): 197โ€“208. 649: 620:(2): 705โ€“714. 596: 561: 512: 474: 445:(6): 726โ€“737. 425: 381: 380: 378: 375: 374: 373: 370: 363: 361: 358: 351: 329:flow cytometry 313: 310: 300: 297: 272: 269: 219:proteins, the 211:) anchored to 204: 201: 169:photosystem II 161:Phycobilisomes 156: 155: 152: 151: 146: 140: 139: 126: 120: 119: 109: 102: 101: 93: 92: 79: 73: 72: 67: 61: 60: 55: 49: 48: 45: 41: 40: 36: 35: 32: 24: 23: 15: 9: 6: 4: 3: 2: 2259: 2248: 2245: 2243: 2240: 2238: 2235: 2233: 2230: 2228: 2225: 2224: 2222: 2207: 2204: 2202: 2199: 2193: 2190: 2188: 2185: 2184: 2183: 2180: 2178: 2175: 2173: 2170: 2168: 2165: 2164: 2163: 2160: 2156: 2153: 2152: 2151: 2147: 2143: 2142:Fertilization 2140: 2138: 2135: 2134: 2133: 2129: 2126: 2122: 2119: 2117: 2114: 2113: 2112: 2109: 2108: 2106: 2100: 2086: 2083: 2081: 2078: 2076: 2073: 2071: 2068: 2066: 2063: 2061: 2058: 2056: 2053: 2051: 2048: 2046: 2043: 2042: 2040: 2034: 2025: 2022: 2019: 2018: 2017: 2014: 2010:Pleuromitosis 2009: 2006: 2003: 2000: 1999: 1998: 1995: 1993: 1990: 1988: 1985: 1981: 1978: 1977: 1976: 1973: 1971: 1968: 1967: 1965: 1959: 1953: 1950: 1948: 1947:Hydrogenosome 1945: 1944: 1942: 1936: 1930: 1927: 1925: 1922: 1920: 1917: 1915: 1912: 1911: 1909: 1903: 1897: 1894: 1892: 1889: 1887: 1884: 1882: 1879: 1877: 1874: 1872: 1869: 1867: 1864: 1862: 1859: 1857: 1854: 1852: 1849: 1848: 1846: 1843: 1836: 1829: 1825: 1822: 1821:Multicellular 1819: 1812: 1809: 1808: 1807: 1804: 1802: 1799: 1798: 1797: 1794: 1791: 1788: 1785: 1783: 1780: 1778: 1774: 1770: 1767: 1764: 1761: 1758: 1757: 1756: 1753: 1750: 1746: 1743: 1741: 1738: 1736: 1733: 1731: 1728: 1727: 1726: 1723: 1722: 1720: 1717: 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543: 539: 535: 531: 527: 526:EXCLI Journal 523: 516: 508: 504: 500: 496: 492: 488: 481: 479: 470: 466: 461: 456: 452: 448: 444: 440: 439:Cell Research 436: 429: 420: 415: 410: 405: 401: 397: 393: 386: 382: 367: 362: 355: 350: 349: 348: 346: 342: 338: 334: 330: 326: 322: 319: 309: 305: 296: 294: 289: 287: 282: 279: 268: 266: 262: 261:phycourobilin 258: 254: 250: 246: 245:tetrapyrroles 242: 238: 234: 233:phycoerythrin 230: 226: 222: 218: 214: 210: 200: 198: 194: 190: 186: 182: 178: 177:cyanobacteria 174: 173:photosystem I 170: 166: 162: 150: 147: 145: 141: 138: 134: 130: 127: 125: 121: 117: 113: 110: 107: 103: 98: 94: 91: 87: 83: 80: 78: 74: 71: 68: 66: 62: 59: 56: 54: 50: 47:Phycobilisome 46: 42: 37: 30: 25: 20: 2232:Bacteriology 2227:Cell anatomy 2162:Heterotrophy 2132:Reproduction 2007:Orthomitosis 1992:Heterokaryon 1939:Mitochondria 1840:Cell surface 1716:organization 1672:Opisthokonta 1495:Micronucleus 1490:Macronucleus 1392:Pneumatocyst 1248: 1222: 1208:Glaucophytes 1192:Phragmoplast 1131:Thallophytes 1058:Protistology 1054:Microbiology 1006: 900:Lipoproteins 792: 788: 763:. Retrieved 756:the original 735: 731: 704:the original 699: 687: 662: 658: 652: 617: 613: 599: 574: 570: 564: 529: 525: 515: 490: 486: 442: 438: 428: 399: 395: 385: 345:Stokes shift 335:and protein 315: 312:Applications 306: 302: 290: 286:water column 280: 274: 209:polypeptides 206: 189:glaucophytes 181:chloroplasts 160: 159: 2192:Necrotrophy 2177:Saprotrophy 2167:Phagotrophy 2155:Phototrophy 2148:Nutrition: 2137:Life cycles 2128:Development 2102:Ecology and 1970:Nucleomorph 1924:Pseudopodia 1725:Unicellular 1609:Euglenoidea 1593:Kinetoplast 1377:Brown algae 1345:Mastigoneme 1283:Mastigoneme 1273:Cryptophyta 1183:green algae 1141:Slime molds 493:(1): 1โ€“16. 337:microarrays 278:chlorophyll 249:phycobilins 229:phycocyanin 193:green algae 179:and in the 39:Identifiers 2247:Organelles 2221:Categories 2206:Auxotrophy 2201:Mixotrophy 2182:Parasitism 2172:Osmotrophy 2150:Autotrophy 2104:physiology 1980:Plasmodium 1906:Locomotion 1842:structures 1806:Coenocytic 1550:Phytomyxea 1521:Apicoplast 1449:Dinokaryon 1428:Trichocyst 1299:Haptophyte 1187:Phycoplast 1155:Morphology 1126:Cryptogams 972:Glycocalyx 765:2014-06-07 532:: 268โ€“89. 377:References 251:including 112:structures 2187:Biotrophy 2060:Extrusome 2050:Cytostome 1914:Flagellum 1871:Cell wall 1830:/histonal 1810:Siphonous 1801:Syncytial 1769:Coenobial 1765:Sarcinoid 1714:Levels of 1653:Macrocyst 1633:Amoebozoa 1598:Glycosome 1526:Microneme 1406:Alveolata 1314:Haptonema 1309:Coccolith 1288:Periplast 1234:Red algae 1218:Cyanelles 1105:Infusoria 1012:Porosomes 577:: 47โ€“77. 507:255012748 247:known as 213:thylakoid 185:red algae 70:IPR012128 2080:Axostyle 2075:Pyrenoid 2055:Fimbriae 1987:Dikaryon 1952:Mitosome 1881:Skeleton 1866:Frustule 1856:Mucilage 1828:tissular 1752:Colonial 1735:Amoeboid 1730:Monadoid 1658:Sorocarp 1573:Excavate 1540:Rhizaria 1470:Ciliates 1454:Dinocyst 1415:General: 1366:Frustule 1337:General: 1263:Hacrobia 1114:Sporozoa 1109:Ciliates 1098:Heliozoa 1078:Protozoa 1062:Protists 752:11406150 679:12373519 644:24760817 606:Smith AG 556:26417362 469:25998682 321:Archived 271:Function 129:RCSB PDB 65:InterPro 2023:Zygotic 2020:Gametic 1962:Nucleus 1740:Coccoid 1705:General 1516:Rhoptry 1423:Alveoli 1356:Diatoms 1093:Testate 910:Sterols 812:8448738 635:4044857 591:3924069 547:4553884 460:4456626 419:9205905 235:(s) or 58:PF00502 2026:Sporic 2004:Closed 1919:Cilium 1876:Lorica 1777:hyphal 1485:Cirrus 1480:Cilium 1387:Lamina 1069:Former 833:(MeSH) 809:  750:  677:  642:  632:  589:  554:  544:  505:  467:  457:  416:  197:plants 144:PDBsum 118:  108:  90:SUPFAM 44:Symbol 2037:Other 1891:Theca 1861:Scale 1459:Theca 1121:Algae 955:Other 759:(PDF) 728:(PDF) 707:(PDF) 696:(PDF) 675:S2CID 503:S2CID 86:SCOPe 77:SCOP2 2045:Cyst 2001:Open 1886:Test 1824:s.s. 1755:s.s. 748:PMID 640:PMID 587:PMID 552:PMID 465:PMID 263:and 195:and 187:and 171:and 163:are 137:PDBj 133:PDBe 116:ECOD 106:Pfam 82:1cpc 53:Pfam 1185:": 807:PMC 797:doi 740:doi 736:254 667:doi 630:PMC 622:doi 618:165 579:doi 542:PMC 534:doi 495:doi 455:PMC 447:doi 414:PMC 404:doi 341:Cy5 183:of 175:in 124:PDB 2223:: 1060:: 1056:: 805:. 795:. 793:12 791:. 787:. 746:. 734:. 730:. 715:^ 698:. 673:. 661:. 638:. 628:. 616:. 612:. 585:. 575:14 573:. 550:. 540:. 530:14 528:. 524:. 501:. 491:68 489:. 477:^ 463:. 453:. 443:25 441:. 437:. 412:. 402:. 400:13 398:. 394:. 331:, 327:, 295:. 259:, 255:, 199:. 135:; 131:; 114:/ 88:/ 84:/ 2130:/ 1826:/ 1684:: 1645:: 1611:: 1585:: 1508:: 1472:: 1441:: 1379:: 1358:: 1301:: 1275:: 1236:: 1210:: 1181:" 1107:/ 1046:e 1039:t 1032:v 944:/ 935:/ 865:e 858:t 851:v 799:: 768:. 742:: 681:. 669:: 663:9 646:. 624:: 593:. 581:: 558:. 536:: 509:. 497:: 471:. 449:: 406:: 281:a

Index


Pfam
PF00502
InterPro
IPR012128
SCOP2
1cpc
SCOPe
SUPFAM
Pfam
structures
ECOD
PDB
RCSB PDB
PDBe
PDBj
PDBsum
structure summary
light-harvesting antennae
photosystem II
photosystem I
cyanobacteria
chloroplasts
red algae
glaucophytes
green algae
plants
polypeptides
thylakoid
chromophorylated

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