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197:, describing them, was developed. In 2015 version 3.2 was released. This was the first signed version with a certificate issued by a certification authority. Many of the running issues introduced by java 1.7 and 1.8 with the new security rules were solved. Since 2013 a javascript version (PVJS) is being developed to replace the applet. From 2015 it also allows small edits and in the future it will be a full editor.
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Kutmon, Martina; van Iersel, Martijn P.; Bohler, Anwesha; Kelder, Thomas; Nunes, Nuno; Pico, Alexander R.; Evelo, Chris T.; Murphy, Robert F. (23 February 2015).
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Bohler, Anwesha; Eijssen, Lars M T; van Iersel, Martijn P; Leemans, Christ; Willighagen, Egon L; Kutmon, Martina; Jaillard, Magali; Evelo, Chris T (2015).
158:. Visualization of ones experimental data on the pathways for finding relevant pathways that are over-represented in your data set is possible.
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PathVisio provides a basic set of features for pathway drawing, analysis and visualization. Additional features are available as plugins.
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van Iersel, Martijn P; Kelder, Thomas; Pico, Alexander R; Hanspers, Kristina; Coort, Susan; Conklin, Bruce R; Evelo, Chris (2008).
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594:"WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization"
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653:"Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment"
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is a free open-source pathway analysis and drawing software. It allows drawing, editing, and analyzing
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Pico, AR; Kelder T; van Iersel MP; Hanspers K; Conklin BR; et al. (22 July 2008).
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framework as an applet. Starting from version 3.0 (released in 2012) plugins are
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Jaiswal, Pankaj; Usadel, Björn (2016). "Chapter 4: Plant
Pathway Databases".
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Kutmon, Martina; Lotia, Samad; Evelo, Chris T; Pico, Alexander R (2014).
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Habermann, Bianca; Villaveces, Jose; Koti, Prasanna (June 2015).
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273:"Presenting and exploring biological pathways with PathVisio"
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543:"Tutorial 1: Drawing and annotating pathways in PathVisio"
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332:"PathVisio 3: An Extendable Pathway Analysis Toolbox"
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225:Integration with other programming languages via
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493:"WikiPathways: Pathway Editing for the People"
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173:PathVisio was created primarily at
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181:. The software is developed in
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611:10.12688/f1000research.4254.1
466:"About/Core development team"
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729:Free bioinformatics software
510:10.1371/journal.pbio.0060184
393:. Springer. pp. 71–87.
357:10.1371/journal.pcbi.1004085
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739:Data visualization software
216:for easy editing/publishing
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754:Java platform software
175:Maastricht University
714:PathVisio on Twitter
391:Plant Bioinformatics
252:on 23 September 2013
246:"What is PathVisio?"
179:Gladstone Institutes
472:on 23 February 2014
433:10.2147/AABC.S63534
348:2015PLSCB..11E4085K
156:biological pathways
657:BMC Bioinformatics
277:BMC Bioinformatics
400:978-1-4939-3166-8
219:Integration with
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233:References
141:.pathvisio
128:Apache 2.0
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60:Repository
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426:: 11–22.
299:1471-2105
221:Cytoscape
152:PathVisio
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