2019:
1997:
1975:
1953:
1931:
134:
109:
140:
691:) that has a paralogous copy in HOXD cluster region (located between HOXD11 and HOXD12), suggesting that the HOTAIR conserved sequences predate whole genome duplication events at the root of vertebrate. While the conserved sequence paralogous with HOXD cluster is 32 nucleotide long, the HOTAIR sequence conserved from human to fish is about 200 nucleotide long and is marked by active enhancer features (bidirectional transcription,
2057:
686:
of the HOXD cluster posterior genes located on chromosome 2. The sequence and function of HOTAIR are different in humans and mice. Sequence analysis of HOTAIR revealed that it exists in mammals, has poorly conserved sequences and considerably conserved structures, and has evolved faster than nearby
1732:
Yang Z, Zhou L, Wu LM, Lai MC, Xie HY, Zhang F, Zheng SS (May 2011). "Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation".
147:
1425:
Chen FJ, Sun M, Li SQ, Wu QQ, Ji L, Liu ZL, et al. (November 2013). "Upregulation of the long non-coding RNA HOTAIR promotes esophageal squamous cell carcinoma metastasis and poor prognosis".
1900:
779:
differentiation of skin over the surface of the body. Skin from various anatomical positions is distinct, e.g. the skin of the eyelid differs markedly from that on the sole.
791:
breast cancers. High levels of expression in primary breast tumours are a significant predictor of subsequent metastasis and death. This is partially due to HOTAIR-mediated
1893:
2018:
1996:
1974:
1952:
1930:
397:
848:
1907:
606:
2136:
2102:
2121:
1319:"Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer"
831:
759:
739:
1772:"Long non-coding RNA HOTAIR is an independent prognostic marker for nasopharyngeal carcinoma progression and survival"
807:, the prevention of HOTAIR expression leads to a reduction in invasive potential of that cell. It is also involved in
1517:"Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression"
835:
1002:"Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans"
688:
133:
108:
440:
57:, HOXAS, HOXC-AS4, HOXC11-AS1, NCRNA00072, HOX transcript antisense RNA, HOTAIR long untranslated RNA, human
66:
1656:"Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA"
1885:
146:
2095:
139:
687:
HoxC genes. A subsequent study identified HOTAIR has 32 nucleotides long conserved noncoding element (
682:. It is the first example of an RNA expressed on one chromosome that has been found to influence the
53:
1105:"Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs"
683:
22:
2131:
2126:
743:
1212:
Portoso M, Ragazzini R, BrenÄŤiÄŤ Ĺ˝, Moiani A, Michaud A, Vassilev I, et al. (April 2017).
2088:
122:
889:"Structural and functional differences in the long non-coding RNA hotair in mouse and human"
866:
78:
1528:
1515:
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea
Morales D, et al. (July 2009).
1381:
1168:
1013:
951:
8:
1000:
Nepal C, Taranta A, Hadzhiev Y, Pundhir S, Mydel P, Lenhard B, et al. (April 2020).
1532:
1385:
1172:
1017:
955:
1811:
1798:
1771:
1758:
1680:
1655:
1637:
1612:
1594:
1569:
1551:
1516:
1503:
1450:
1402:
1369:
1345:
1318:
1294:
1269:
1242:
1213:
1189:
1156:
1129:
1104:
1036:
1001:
974:
939:
915:
888:
712:
82:
758:
locus by PRC2. PRC2 is dispensable for HOTAIR-mediated transcriptional silencing. The
1815:
1803:
1750:
1720:
1685:
1642:
1599:
1556:
1495:
1442:
1407:
1350:
1299:
1285:
1265:
1247:
1194:
1155:
Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, et al. (August 2010).
1134:
1103:
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, et al. (June 2007).
1082:
1041:
979:
920:
46:
1762:
1507:
1454:
1370:"Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis"
1793:
1783:
1742:
1710:
1675:
1667:
1654:
Kaneko S, Li G, Son J, Xu CF, Margueron R, Neubert TA, Reinberg D (December 2010).
1632:
1624:
1589:
1581:
1546:
1536:
1485:
1434:
1397:
1389:
1340:
1330:
1289:
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1116:
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1021:
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808:
226:
157:
1368:
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, et al. (April 2010).
905:
792:
201:
86:
2076:
853:
National Center for
Biotechnology Information, U.S. National Library of Medicine
2072:
1521:
Proceedings of the
National Academy of Sciences of the United States of America
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1603:
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1411:
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1138:
1086:
1045:
983:
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99:
1915:
1715:
1698:
1628:
1585:
1317:
Liu XH, Sun M, Nie FQ, Ge YB, Zhang EB, Yin DD, et al. (April 2014).
1157:"Long noncoding RNA as modular scaffold of histone modification complexes"
649:
766:
1671:
1393:
940:"The sequence, structure and evolutionary features of HOTAIR in mammals"
788:
776:
116:
1788:
1438:
1077:
1060:
751:
708:
361:
185:
172:
74:
1270:"Homeobox genes, fetal wound healing, and skin regional specificity"
487:
483:
1613:"Long noncoding RNA in genome regulation: prospects and mechanisms"
796:
755:
720:
667:
638:
2032:
2010:
1988:
1966:
1944:
803:
of HER2 expression. In cells, especially those that over express
763:
696:
692:
469:
426:
70:
619:
383:
1211:
727:
726:. It is shuttled from chromosome 12 to chromosome 2 by the
2064:
2056:
1880:
1869:
1858:
1847:
1836:
999:
804:
769:
747:
675:
1514:
1154:
716:
1770:
Nie Y, Liu X, Qu S, Song E, Zou H, Gong C (April 2013).
209:
1570:"HOTAIR: Flight of noncoding RNAs in cancer metastasis"
1916:
Gallery of HOTAIR conserved secondary structure images
1102:
715:
molecule, which controls gene expression. Its source
331:
702:
2028:
2006:
1984:
1962:
1940:
827:
825:
823:
886:
156:
2113:
1367:
799:through sequestration of miR-331-3p, which is a
754:state. It is required for gene-silencing of the
820:
1150:
1148:
2096:
1901:
1731:
1653:
1769:
1361:
1258:
995:
993:
1474:"HOTAIR lifts noncoding RNAs to new levels"
1471:
1424:
1316:
1145:
1052:
832:GRCh38: Ensembl release 89: ENSG00000228630
2103:
2089:
1908:
1894:
1877:Page for HOTAIR intron conserved region 5
1866:Page for HOTAIR intron conserved region 4
1797:
1787:
1714:
1679:
1636:
1610:
1593:
1550:
1540:
1489:
1401:
1344:
1334:
1293:
1241:
1188:
1128:
1076:
1058:
1035:
1025:
990:
973:
963:
914:
904:
1567:
1274:The Journal of Investigative Dermatology
937:
782:
1696:
2114:
2027:: Secondary structure taken from the
2005:: Secondary structure taken from the
1983:: Secondary structure taken from the
1961:: Secondary structure taken from the
1939:: Secondary structure taken from the
1264:
1098:
1096:
1889:
1218:-mediated transcriptional repression"
678:located between HOXC11 and HOXC12 on
161:
120:
115:
2051:
1703:Acta Biochimica et Biophysica Sinica
887:Schorderet P, Duboule D (May 2011).
1611:Hung T, Chang HY (September 2010).
1093:
13:
1855:Page for HOTAIR conserved region 3
1844:Page for HOTAIR conserved region 2
1833:Page for HOTAIR conserved region 1
1568:Wan Y, Chang HY (September 2010).
1464:
809:esophageal squamous cell carcinoma
14:
2148:
1824:
1472:Woo CJ, Kingston RE (June 2007).
938:He S, Liu S, Zhu H (April 2011).
775:It is an important factor in the
762:end of HOTAIR interacts with the
2055:
2017:
1995:
1973:
1951:
1929:
1286:10.1046/j.1523-1747.2003.00002.x
703:Gene and transcribed RNA product
145:
138:
132:
107:
1699:"Writer meets eraser in HOTAIR"
1418:
1310:
1205:
1061:"Genetics: The production line"
746:Polycomb Repressive Complex 2 (
742:end of HOTAIR interacts with a
707:The HOTAIR gene contains 6,232
2137:Human chromosome 12 gene stubs
1697:Sun L, Fang J (January 2011).
931:
880:
859:
841:
787:HOTAIR is highly expressed in
320:More reference expression data
1:
814:
130:
2122:Genes on human chromosome 12
2075:. You can help Knowledge by
906:10.1371/journal.pgen.1002071
750:) and as a result regulates
7:
1735:Annals of Surgical Oncology
1059:Petherick A (August 2008).
867:"Genecards entry on HOTAIR"
733:
10:
2153:
2050:
1491:10.1016/j.cell.2007.06.014
1121:10.1016/j.cell.2007.05.022
1027:10.1016/j.isci.2020.101008
20:
1921:
1747:10.1245/s10434-011-1581-y
1214:"PRC2 is dispensable for
849:"Human PubMed Reference:"
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35:
30:
1427:Molecular Carcinogenesis
965:10.1186/1471-2148-11-102
944:BMC Evolutionary Biology
607:Chr 12: 53.96 – 53.97 Mb
23:Hot air (disambiguation)
1660:Genes & Development
1542:10.1073/pnas.0904715106
1336:10.1186/1476-4598-13-92
1234:10.15252/embj.201695335
1181:10.1126/science.1192002
744:Polycomb-group protein
1629:10.4161/rna.7.5.13216
1586:10.4161/cc.9.17.13122
783:Clinical significance
711:and encodes a 2.2 kb
123:Chromosome 12 (human)
719:is located within a
21:For other uses, see
16:Gene found in humans
1716:10.1093/abbs/gmq110
1672:10.1101/gad.1983810
1533:2009PNAS..10611667K
1394:10.1038/nature08975
1386:2010Natur.464.1071G
1173:2010Sci...329..689T
1018:2020iSci...23j1008N
956:2011BMCEE..11..102H
2063:This article on a
801:negative regulator
713:long noncoding RNA
87:HOTAIR - orthologs
2084:
2083:
2045:
2044:
2031:database. Family
2009:database. Family
1987:database. Family
1965:database. Family
1943:database. Family
1789:10.1111/cas.12092
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1527:(28): 11667–72.
1511:
1493:
1459:
1458:
1439:10.1002/mc.21944
1422:
1416:
1415:
1405:
1380:(7291): 1071–6.
1365:
1359:
1358:
1348:
1338:
1323:Molecular Cancer
1314:
1308:
1307:
1297:
1268:(January 2003).
1262:
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1255:
1245:
1222:The EMBO Journal
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1167:(5992): 689–93.
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1078:10.1038/4541042a
1071:(7208): 1042–5.
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559:RefSeq (protein)
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259:popliteal artery
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241:Top expressed in
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2110:
2109:
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2035:
2022:
2013:
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1991:
1978:
1969:
1956:
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1934:
1917:
1914:
1827:
1822:
1666:(23): 2615–20.
1467:
1465:Further reading
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899:(5): e1002071.
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650:View/Edit Human
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602:Location (UCSC)
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441:ENSG00000228630
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98:Gene location (
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2132:Non-coding RNA
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1825:External links
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1776:Cancer Science
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2069:chromosome 12
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1484:(7): 1257–9.
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1070:
1066:
1062:
1055:
1047:
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1038:
1033:
1028:
1023:
1019:
1015:
1012:(4): 101008.
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1007:
1003:
996:
994:
985:
981:
976:
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953:
949:
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894:
893:PLOS Genetics
890:
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868:
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854:
850:
844:
837:
833:
828:
826:
824:
819:
812:
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797:HER2 oncogene
794:
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773:
771:
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749:
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741:
731:
729:
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718:
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710:
700:
698:
694:
690:
685:
684:transcription
681:
680:chromosome 12
677:
674:) is a human
673:
672:antisense RNA
669:
665:
651:
647:
643:
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636:
626:
624:
621:
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593:
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583:
580:
574:
568:
564:
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550:
544:
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531:
525:
521:
518:
516:RefSeq (mRNA)
514:
507:
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496:
490:
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485:
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476:
473:
471:
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460:
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417:
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343:
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96:
92:
88:
84:
80:
76:
72:
68:
60:
55:
48:
43:
38:
34:
29:
24:
19:
2077:expanding it
2062:
2047:
2024:
2002:
1980:
1958:
1936:
1779:
1775:
1738:
1734:
1706:
1702:
1663:
1659:
1623:(5): 582–5.
1620:
1616:
1577:
1573:
1524:
1520:
1481:
1477:
1430:
1426:
1420:
1377:
1373:
1363:
1326:
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1225:
1221:
1215:
1207:
1164:
1160:
1112:
1108:
1068:
1064:
1054:
1009:
1005:
947:
943:
933:
896:
892:
882:
870:. Retrieved
861:
852:
843:
786:
774:
737:
724:gene cluster
706:
663:
662:
589:
570:
546:
527:
505:
482:
458:
439:
415:
396:
376:
371:
279:right testis
225:
218:
62:External IDs
18:
1617:RNA Biology
1280:(1): 9–11.
767:demethylase
670:transcript
287:sural nerve
271:skin of leg
184:53,974,956
171:53,962,308
40:Identifiers
2116:Categories
1709:(1): 1–3.
1574:Cell Cycle
950:(1): 102.
838:, May 2017
815:References
789:metastatic
777:epigenetic
728:Suz-Twelve
229:(ortholog)
2067:on human
1816:207103684
1266:Chuong CM
752:chromatin
730:protein.
398:100124700
362:Orthologs
75:GeneCards
2025:HOTAIR_5
2003:HOTAIR_4
1981:HOTAIR_3
1959:HOTAIR_2
1937:HOTAIR_1
1808:23281836
1763:21457941
1755:21327457
1725:21138898
1690:21123648
1647:20930520
1604:20864820
1561:19571010
1508:18124576
1500:17604716
1455:12457373
1447:24151120
1412:20393566
1355:24775712
1304:12535191
1252:28167697
1199:20616235
1139:17604720
1087:18756228
1046:32268280
1006:iScience
984:21496275
925:21637793
834:–
734:Function
699:peaks).
639:Wikidata
251:testicle
163:12q13.13
2033:RF01908
2011:RF01907
1989:RF01906
1967:RF01905
1945:RF01904
1799:7657223
1681:2994035
1638:3073254
1595:3066151
1552:2704857
1529:Bibcode
1403:3049919
1382:Bibcode
1346:4021402
1295:4383243
1243:5391141
1190:2967777
1169:Bibcode
1161:Science
1130:2084369
1037:7139118
1014:Bibcode
975:3103462
952:Bibcode
916:3102750
872:20 July
836:Ensembl
795:of the
764:histone
697:H3K27ac
693:H3K4me1
470:UniProt
427:Ensembl
368:Species
204:pattern
47:Aliases
1814:
1806:
1796:
1761:
1753:
1723:
1688:
1678:
1645:
1635:
1602:
1592:
1559:
1549:
1506:
1498:
1453:
1445:
1410:
1400:
1374:Nature
1353:
1343:
1329:: 92.
1302:
1292:
1250:
1240:
1216:HOTAIR
1197:
1187:
1137:
1127:
1085:
1065:Nature
1044:
1034:
982:
972:
923:
913:
664:HOTAIR
622:search
620:PubMed
384:Entrez
332:BioGPS
79:HOTAIR
71:611400
54:HOTAIR
31:HOTAIR
2071:is a
1812:S2CID
1759:S2CID
1504:S2CID
1451:S2CID
811:.
666:(for
377:Mouse
372:Human
267:gonad
227:Mouse
220:Human
167:Start
100:Human
2073:stub
2065:gene
2029:Rfam
2007:Rfam
1985:Rfam
1963:Rfam
1941:Rfam
1881:Rfam
1870:Rfam
1859:Rfam
1848:Rfam
1837:Rfam
1804:PMID
1751:PMID
1721:PMID
1686:PMID
1643:PMID
1600:PMID
1557:PMID
1496:PMID
1478:Cell
1443:PMID
1408:PMID
1351:PMID
1300:PMID
1248:PMID
1195:PMID
1135:PMID
1109:Cell
1083:PMID
1042:PMID
980:PMID
921:PMID
874:2010
805:PRC2
770:LSD1
756:HOXD
748:PRC2
738:The
721:HOXC
695:and
676:gene
210:Bgee
158:Band
117:Chr.
67:OMIM
1879:at
1868:at
1857:at
1846:at
1835:at
1794:PMC
1784:doi
1780:104
1743:doi
1711:doi
1676:PMC
1668:doi
1633:PMC
1625:doi
1590:PMC
1582:doi
1547:PMC
1537:doi
1525:106
1486:doi
1482:129
1435:doi
1398:PMC
1390:doi
1378:464
1341:PMC
1331:doi
1290:PMC
1282:doi
1278:120
1238:PMC
1230:doi
1185:PMC
1177:doi
1165:329
1125:PMC
1117:doi
1113:129
1073:doi
1069:454
1032:PMC
1022:doi
970:PMC
960:doi
911:PMC
901:doi
717:DNA
689:CNE
668:HOX
628:n/a
613:n/a
591:n/a
572:n/a
548:n/a
529:n/a
506:n/a
459:n/a
416:n/a
340:n/a
307:n/a
180:End
83:OMA
2118::
1810:.
1802:.
1792:.
1778:.
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1749:.
1739:18
1737:.
1719:.
1707:43
1705:.
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1183:.
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1159:.
1147:^
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1020:.
1010:23
1008:.
1004:.
992:^
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909:.
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760:3′
740:5′
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