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45:
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database for subsequent analysis and display. Ensembl makes these data freely accessible to the world research community. All the data and code produced by the
Ensembl project is available to download, and there is also a publicly accessible database server allowing remote access. In addition, the
40:
186:, whereby a team of scientists tries to locate genes using experimental data from scientific journals and public databases. However this is a slow, painstaking task. The alternative, known as automated annotation, is to use the power of computers to do the complex
300:. These are shown as data tracks, and individual tracks can be turned on and off, allowing the user to customise the display to suit their research interests. The interface also enables the user to zoom in to a region or move along the genome in either direction.
2905:
2173:
Ruffier, Magali; Kähäri, Andreas; Komorowska, Monika; Keenan, Stephen; Laird, Matthew; Longden, Ian; Proctor, Glenn; Searle, Steve; Staines, Daniel; Taylor, Kieron; Vullo, Alessandro; Yates, Andrew; Zerbino, Daniel; Flicek, Paul (January 2017).
380:
database, avoiding the need to download enormous datasets. The users could even choose to retrieve data from the MySQL with direct SQL queries, but this requires an extensive knowledge of the current database schema.
2280:
Howe, Kevin L.; Contreras-Moreira, Bruno; De Silva, Nishadi; Maslen, Gareth; Akanni, Wasiu; Allen, James; Alvarez-Jarreta, Jorge; Barba, Matthieu; Bolser, Dan M.; Cambell, Lahcen; Carbajo, Manuel (8 January 2020).
403:
The annotated genomes include most fully sequenced vertebrates and selected model organisms. All of them are eukaryotes, there are no prokaryotes. As of 2022, there are 271 species registered, this includes:
319:) across a range of species. The graphics are complemented by tabular displays, and in many cases data can be exported directly from the page in a variety of standard file formats such as
365:
to be written to retrieve data of interest. The same API is used internally by the web interface to display the data. It is divided in sections like the core API, the compara API (for
3303:
2850:
1541:
369:
data), the variation API (for accessing SNPs, SNVs, CNVs..), and the functional genomics API (to access regulatory data). The
Ensembl website provides extensive information on
202:, with the initial goals of automatically annotate the human genome, integrate this annotation with available biological data and make all this knowledge publicly available.
2814:
2753:
1537:
2648:
3153:
2832:
1460:
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Hubbard, T. J. P.; Aken, B. L.; Ayling, S.; Ballester, B.; Beal, K.; Bragin, E.; Brent, S.; Chen, Y.; Clapham, P.; Clarke, L.; Coates, G. (January 2009).
335:
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Central to the
Ensembl concept is the ability to automatically generate graphical views of the alignment of genes and other genomic data against a
3256:
2844:
1783:
All data part of the
Ensembl project is open access and all software is open source, being freely available to the scientific community, under a
264:
As of 2020, Ensembl supported over 50 000 genomes across both
Ensembl and Ensembl Genomes databases, adding some new innovative features such as
182:. However the genome alone is of little use, unless the locations and relationships of individual genes can be identified. One option is manual
3148:
2911:
2858:
2759:
159:
3174:
2887:
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2922:
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261:, focusing on providing taxonomic and evolutionary context to genes, whilst the original project continues to focus on vertebrates.
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2114:
Curwen, Val; Eyras, Eduardo; Andrews, T. Daniel; Clarke, Laura; Mongin, Emmanuel; Searle, Steven M. J.; Clamp, Michele (May 2004).
2387:
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Externally produced data can also be added to the display by uploading a suitable file in one of the supported formats, such as
3693:
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2881:
2658:
205:
In the
Ensembl project, sequence data are fed into the gene annotation system (a collection of software "pipelines" written in
2838:
2736:
2594:
1839:
2864:
1787:
license. Currently, Ensembl database website is mirrored at four different locations worldwide to improve the service.
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449:
128:
80:
2718:
2706:
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461:
131:, which provides a centralized resource for geneticists, molecular biologists and other researchers studying the
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3713:
3200:
2765:
1012:
976:
682:
618:
361:(Application Programming Interface) that models biological objects such as genes and proteins, allowing simple
395:
server which can be used to download entire MySQL databases as well some selected data sets in other formats.
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3364:
2685:
2602:
2570:
3093:
3015:
2534:
2473:
1844:
1448:
1352:
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3293:
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2566:
2508:
2176:"Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation"
1602:
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2623:
521:
3683:
3673:
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2793:
2747:
1296:
934:
3143:
2906:
International
Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics
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988:
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505:
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17:
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data-mining tool. It provides a web interface for downloading datasets using complex queries.
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1420:
1368:
1234:
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1040:
1036:
980:
906:
882:
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268:, a new website designed to make genome annotation data available more quickly to users, and
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1190:
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1110:
1016:
1008:
1004:
738:
710:
598:
545:
477:
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198:. The Ensembl project was launched in 1999 in response to the imminent completion of the
163:
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3035:
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2015:
1990:
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2713:
Microsoft
Research - University of Trento Centre for Computational and Systems Biology
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Stabenau A, McVicker G, Melsopp C, Proctor G, Clamp M, Birney E (February 2004).
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469:
238:
218:
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Ensembl website provides computer-generated visual displays of much of the data.
72:
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Over time the project has expanded to include additional species (including key
3573:
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209:) which creates a set of predicted gene locations and saves them in a
1800:
1681:
1642:
1598:
1512:
1238:
1166:
898:
718:
654:
529:
341:
Graphics are generated using a suite of custom Perl modules based on
304:
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Other displays show data at varying levels of resolution, from whole
230:
175:
3343:
3288:
3266:
2653:
2590:
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385:
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191:
148:
2448:
2438:
3605:
3308:
3251:
2826:
2680:
2633:
2598:
2283:"Ensembl Genomes 2020-enabling non-vertebrate genomic research"
1869:
1711:
1618:
1546:
1452:
890:
778:
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702:
567:
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39:
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and regulatory features. Since April 2009, a sister project,
210:
2815:
African
Society for Bioinformatics and Computational Biology
2038:
Flicek P, Aken BL, Ballester B, et al. (January 2010).
1989:
Flicek P, Amode MR, Barrell D, et al. (November 2010).
3318:
3313:
3214:
3140:
Sainsbury
Wellcome Centre for Neural Circuits and Behaviour
2754:
Max Planck Institute of Molecular Cell Biology and Genetics
2556:
2428:
1738:
1638:
1274:
1126:
1056:
806:
774:
289:
206:
179:
27:
Scientific project at the European Bioinformatics Institute
2421:
2222:
392:
111:
2443:
2433:
1138:
830:
766:
758:
750:
746:
358:
354:
195:
2833:
International Nucleotide Sequence Database Collaboration
2113:
1819:---- Cloud-based mirror on East Coast of United States
1811:---- Cloud-based mirror on West Coast of United States
2454:
Ensembl: Browsing chordate genomes on EBI Train OnLine
241:, has extended the scope of Ensembl into invertebrate
233:) as well as a wider range of genomic data, including
311:
sequences, or present other types of display such as
353:
In addition to its website, Ensembl provides a REST
2037:
2525:, database of protein sequences grouping together
1988:
3196:Wellcome Trust Centre for the History of Medicine
3660:
2760:US National Center for Biotechnology Information
3257:Coalition for Epidemic Preparedness Innovations
2845:International Society for Computational Biology
376:This software can be used to access the public
164:the University of California, Santa Cruz (UCSC)
2912:ISCB Africa ASBCB Conference on Bioinformatics
2116:"The Ensembl automatic gene annotation system"
345:, the standard Perl graphics display library.
307:down to text-based representations of DNA and
3094:
2859:Institute of Genomics and Integrative Biology
2474:
348:
178:, which code for approximately 20,000–25,000
2888:European Conference on Computational Biology
2923:Research in Computational Molecular Biology
1887:
174:The human genome consists of three billion
3101:
3087:
2900:International Conference on Bioinformatics
2481:
2467:
384:Large datasets can be retrieved using the
279:
3669:Genetic engineering in the United Kingdom
2894:Intelligent Systems for Molecular Biology
2363:
2314:
2256:
2199:
2149:
2131:
2089:"Medical definition of Genome Annotation"
2063:
2014:
1965:
1913:
1888:Yates A. D.; et al. (January 2020).
3689:Science and technology in Cambridgeshire
3629:Wellcome Trust Principal Research Fellow
2087:Davis, Charles Patrick (29 March 2021).
1881:
283:
3679:Medical databases in the United Kingdom
2882:Basel Computational Biology Conference
1939:
143:. Ensembl is one of several well known
14:
3661:
3154:WTC for Gene Regulation and Expression
2031:
1982:
1778:
1103:chicken (paternal White leghorn layer)
687:Upper Galilee mountains blind mole rat
3633:Wellcome Trust Senior Research Fellow
3082:
2839:International Society for Biocuration
2737:European Molecular Biology Laboratory
2462:
2340:"The Ensembl Core Software Libraries"
2086:
1942:"The Ensembl genome database project"
1827:---- Cloud-based mirror in Singapore
3598:Institutional Strategic Support Fund
3061:
2331:
1935:
1933:
1840:List of sequenced eukaryotic genomes
2865:Japanese Society for Bioinformatics
24:
3108:
2827:European Molecular Biology network
2488:
398:
25:
3725:
2917:Pacific Symposium on Biocomputing
2821:Australia Bioinformatics Resource
2788:Swiss Institute of Bioinformatics
2771:Netherlands Bioinformatics Centre
2731:European Bioinformatics Institute
2413:
1930:
129:European Bioinformatics Institute
81:European Bioinformatics Institute
3643:
3642:
3213:
3060:
3049:
3048:
2719:Database Center for Life Science
2707:Computational Biology Department
2595:Arabidopsis Information Resource
43:
38:
33:Ensembl genome database project.
3592:Collaborative Awards in Science
3304:Malawi Liverpool Wellcome Trust
2565:Specialised genomic databases:
2380:
127:is a scientific project at the
125:Ensembl genome database project
3595:Investigator Awards in Science
3201:Wellcome Research Laboratories
3166:WTC for Molecular Parasitology
3163:WTC for Mitochondrial Research
2766:Japanese Institute of Genetics
2273:
2216:
2166:
2107:
2080:
1940:Hubbard, T. (1 January 2002).
977:Argentine black and white tegu
683:thirteen-lined ground squirrel
371:how to install and use the API
13:
1:
3694:South Cambridgeshire District
2686:Rosalind (education platform)
2603:Zebrafish Information Network
2571:Saccharomyces Genome Database
2001:(Database issue): D800–D806.
1875:
1542:Periophthalmus magnuspinnatus
272:, a new website to access to
135:of our own species and other
3149:WTC for Cell-Matrix Research
3016:List of biological databases
2535:Protein Information Resource
2235:(Database issue): D690–697.
1845:List of biological databases
446:black-capped squirrel monkey
7:
3294:Genome Reference Consortium
3242:Cambridge Biomedical Campus
2509:European Nucleotide Archive
2050:(Database issue): D557–62.
1833:
1013:Goode's thornscrub tortoise
292:aligned to the human genome
10:
3730:
3175:WTC for Stem Cell Research
1099:chicken (maternal Broiler)
412:
349:Alternative access methods
169:
158:and browsers are found at
3640:
3582:
3491:
3456:
3402:Executive leadership team
3401:
3352:
3222:
3211:
3188:
3180:Wellcome Sanger Institute
3123:
3116:
3044:
2998:
2932:
2874:
2807:
2794:Wellcome Sanger Institute
2748:J. Craig Venter Institute
2694:
2672:
2611:
2496:
1705:
1449:horned golden-line barbel
426:
419:
106:
101:
89:
71:
66:
56:
51:
37:
3144:Science Learning Centres
2777:Philippine Genome Center
1769:Saccharomyces cerevisiae
1607:three-spined stickleback
1538:Paramormyrops kingsleyae
1135:eastern spot-billed duck
1095:chicken (Red junglefowl)
989:chinese softshell turtle
651:North American deermouse
506:golden snub-nosed monkey
3601:Science Strategic Award
3360:Eliza Manningham-Buller
3223:Projects and facilities
3131:Francis Crick Institute
3021:Molecular phylogenetics
2517:China National GeneBank
2192:10.1093/database/bax020
1855:Sequence profiling tool
1722:Drosophila melanogaster
1533:orbiculate cardinalfish
1361:blunt-snouted clingfish
1159:golden-collared manakin
1049:West African mud turtle
603:daurian ground squirrel
450:black snub-nosed monkey
280:Displaying genomic data
3583:Awards and fellowships
3334:Wellcome Genome Campus
3262:COSMIC cancer database
3159:WTC for Human Genetics
3117:Centres and institutes
2725:DNA Data Bank of Japan
2513:DNA Data Bank of Japan
2287:Nucleic Acids Research
2229:Nucleic Acids Research
1946:Nucleic Acids Research
1795:Official mirror sites
1749:Caenorhabditis elegans
1493:Makobe island chichlid
1267:white-throated sparrow
1247:spoon-billed sandpiper
993:common snapping turtle
985:central bearded dragon
803:lesser hedgehog tenrec
635:long-tailed chinchilla
631:lesser Egyptian jerboa
587:arctic ground squirrel
570:(Rodents + Lagomorphs)
293:
3714:Computational biology
3625:Wellcome Trust Centre
3622:Wellcome Image Awards
3247:Cancer Genome Project
3006:Computational biology
2521:Secondary databases:
2040:"Ensembl's 10th year"
1801:UK (Sanger Institute)
1587:Siamese fighting fish
1369:Burton's mouthbrooder
1235:rufous-capped babbler
1041:three-toed box turtle
1037:Pinta Island tortoise
981:blue-ringed sea krait
787:greater horseshoe bat
611:eurasian red squirrel
287:
147:for the retrieval of
3704:Biological databases
3299:Human Genome Project
3272:Diamond Light Source
3230:1000 Genomes Project
3170:WTC for Neuroimaging
2503:Sequence databases:
1817:US East (Amazon AWS)
1809:US West (Amazon AWS)
1631:yellowtail amberjack
1627:western mosquitofish
1551:pinecone soldierfish
1477:large yellow croaker
1271:yellow-billed amazon
1227:ring-necked pheasant
1211:northern spotted owl
1147:eurasian sparrowhawk
1075:blue-crowned manakin
1029:mainland tiger snake
514:greater bamboo lemur
367:comparative genomics
200:Human Genome Project
3618:Wellcome Book Prize
3610:Sir Henry Wellcome
3329:Wellcome Collection
2799:Whitehead Institute
2587:Rat Genome Database
2444:UCSC Genome Browser
2007:10.1093/nar/gkq1064
1958:10.1093/nar/30.1.38
1865:UCSC Genome Browser
1791:
1779:Open source/mirrors
1611:tiger tail seahorse
1563:red-bellied piranha
1509:Monterrey platyfish
1373:channel bull blenny
1207:New Caledonian crow
1199:medium ground finch
1191:little spotted kiwi
1175:helmeted guineafowl
1009:saltwater crocodile
1005:eastern brown snake
739:California sea lion
711:american black bear
599:damaraland mole rat
591:Brazilian guineapig
546:Ugandan red colobus
478:crab-eating macaque
409:
34:
3425:Peter Pereira Gray
3353:Board of governors
3036:Sequence alignment
2743:Flatiron Institute
2392:uswest.ensembl.org
2356:10.1101/gr.1857204
2299:10.1093/nar/gkz890
2241:10.1093/nar/gkn828
2133:10.1101/gr.1858004
2056:10.1093/nar/gkp972
1906:10.1093/nar/gkz966
1803:---- main website
1790:
1693:Ciona intestinalis
1669:Petromyzon marinus
1623:turquoise killfish
1457:indian glassy fish
1433:golden-line barbel
1349:bicolor damselfish
1302:Xenopus tropicalis
1219:oriental scops owl
1215:okarito brown kiwi
1171:great spotted kiwi
1143:eurasian eagle-owl
1111:colared flycatcher
997:common wall lizard
847:Siberian musk deer
534:pig-tailed macaque
407:
391:Last, there is an
315:of similar genes (
294:
276:reference genome.
235:genetic variations
32:
3656:
3655:
3370:Tobias Bonhoeffer
3209:
3208:
3076:
3075:
3031:Sequence database
2545:Protein Data Bank
2539:Other databases:
2293:(D1): D689–D695.
2044:Nucleic Acids Res
1995:Nucleic Acids Res
1900:(D1): D682–D688.
1894:Nucleic Acids Res
1850:Sequence analysis
1831:
1830:
1825:Asia (Amazon AWS)
1776:
1775:
1727:Anopheles gambiae
1635:Takifugu rubripes
1579:sheepshead minnow
1469:javanese ricefish
1441:greater amberjack
1393:clown anemonefish
1297:Leisan spiny toad
1255:Swainson's thrush
1223:pink-footed goose
522:Ma's night monkey
474:Coquerel's sifaka
122:
121:
16:(Redirected from
3721:
3684:Medical genetics
3674:Genome databases
3646:
3645:
3492:Other key people
3457:Former directors
3431:Chonnettia Jones
3365:Michael Ferguson
3339:Wellcome Library
3217:
3136:Gurdon Institute
3121:
3120:
3103:
3096:
3089:
3080:
3079:
3064:
3063:
3052:
3051:
3011:List of biobanks
2975:Stockholm format
2783:Scripps Research
2483:
2476:
2469:
2460:
2459:
2425:
2424:
2422:Official website
2408:
2407:
2405:
2403:
2398:on 6 August 2022
2394:. Archived from
2384:
2378:
2377:
2367:
2335:
2329:
2328:
2318:
2277:
2271:
2270:
2260:
2220:
2214:
2213:
2203:
2170:
2164:
2163:
2153:
2135:
2111:
2105:
2104:
2102:
2100:
2091:. Archived from
2084:
2078:
2077:
2067:
2035:
2029:
2028:
2018:
1986:
1980:
1979:
1969:
1937:
1928:
1927:
1917:
1885:
1792:
1789:
1772:(baker's yeast)
1529:orange clownfish
1497:mangrove rivulus
1489:lyretail cichlid
1481:live sharksucker
1409:denticle herring
1345:barramundi perch
1333:atlantic herring
1251:superb fairywren
1243:small tree finch
723:asian black bear
639:mongolian gerbil
429:Euarchontoglires
410:
406:
298:reference genome
188:pattern-matching
118:
115:
113:
90:Primary citation
47:
42:
35:
31:
21:
3729:
3728:
3724:
3723:
3722:
3720:
3719:
3718:
3659:
3658:
3657:
3652:
3636:
3604:Sir Henry Dale
3578:
3509:Dominic Cadbury
3504:William Castell
3487:
3470:Bridget Ogilvie
3452:
3416:Stephen Caddick
3397:
3348:
3218:
3205:
3184:
3112:
3107:
3077:
3072:
3040:
2994:
2928:
2870:
2851:Student Council
2803:
2702:Broad Institute
2690:
2668:
2607:
2492:
2487:
2439:Ensembl genomes
2420:
2419:
2416:
2411:
2401:
2399:
2386:
2385:
2381:
2344:Genome Research
2336:
2332:
2278:
2274:
2221:
2217:
2171:
2167:
2120:Genome Research
2112:
2108:
2098:
2096:
2095:on 14 June 2021
2085:
2081:
2036:
2032:
1987:
1983:
1938:
1931:
1886:
1882:
1878:
1836:
1781:
1473:jewelled blenny
1465:japanese medaka
1381:chinese rmedaka
1377:channel catfish
1337:atlantic salmon
1155:golden pheasant
1131:eastern buzzard
1123:dark-eyed junco
1107:chilean tinamou
1071:bengalese finch
1067:African ostrich
1001:desert tortoise
939:Tasmanian devil
735:chacoan peccary
619:ground squirrel
595:chinese hamster
583:american beaver
470:common marmoset
401:
399:Current species
351:
282:
239:Ensembl Genomes
219:model organisms
172:
145:genome browsers
141:model organisms
110:
85:
73:Research center
28:
23:
22:
15:
12:
11:
5:
3727:
3717:
3716:
3711:
3709:Bioinformatics
3706:
3701:
3699:Wellcome Trust
3696:
3691:
3686:
3681:
3676:
3671:
3654:
3653:
3641:
3638:
3637:
3635:
3634:
3631:
3626:
3623:
3620:
3615:
3608:
3602:
3599:
3596:
3593:
3590:
3589:Capital Awards
3586:
3584:
3580:
3579:
3577:
3576:
3574:Henry Wellcome
3571:
3566:
3561:
3556:
3551:
3546:
3541:
3536:
3531:
3526:
3521:
3516:
3511:
3506:
3501:
3495:
3493:
3489:
3488:
3486:
3485:
3479:
3476:Michael Dexter
3473:
3467:
3464:Peter Williams
3460:
3458:
3454:
3453:
3451:
3450:
3447:
3444:
3441:
3438:
3435:
3432:
3429:
3428:Mark Henderson
3426:
3423:
3420:
3417:
3414:
3411:
3405:
3403:
3399:
3398:
3396:
3395:
3390:
3385:
3383:Bryan Grenfell
3380:
3375:
3372:
3367:
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3156:
3151:
3146:
3141:
3138:
3133:
3127:
3125:
3118:
3114:
3113:
3110:Wellcome Trust
3106:
3105:
3098:
3091:
3083:
3074:
3073:
3071:
3070:
3058:
3045:
3042:
3041:
3039:
3038:
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3028:
3023:
3018:
3013:
3008:
3002:
3000:
2999:Related topics
2996:
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2993:
2992:
2987:
2982:
2977:
2972:
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2962:
2957:
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2947:
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2609:
2608:
2606:
2605:
2563:
2537:
2519:
2500:
2498:
2494:
2493:
2490:Bioinformatics
2486:
2485:
2478:
2471:
2463:
2457:
2456:
2451:
2446:
2441:
2436:
2431:
2426:
2415:
2414:External links
2412:
2410:
2409:
2388:"Species List"
2379:
2350:(5): 929–933.
2330:
2272:
2225:"Ensembl 2009"
2215:
2165:
2126:(5): 942–950.
2106:
2079:
2030:
1991:"Ensembl 2011"
1981:
1929:
1890:"Ensembl 2020"
1879:
1877:
1874:
1873:
1872:
1867:
1862:
1860:Sequence motif
1857:
1852:
1847:
1842:
1835:
1832:
1829:
1828:
1821:
1820:
1813:
1812:
1805:
1804:
1797:
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1780:
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1752:
1745:
1743:
1741:
1735:
1734:
1718:
1716:
1714:
1709:
1703:
1702:
1699:Ciona savignyi
1689:
1687:
1685:
1677:
1676:
1666:
1664:
1662:
1654:
1653:
1591:spinny chromis
1583:shortfin molly
1505:Midas chichlid
1429:gilthead bream
1421:elephant shark
1389:climbing perch
1385:chinook salmon
1318:
1316:
1314:
1306:
1305:
1294:
1292:
1290:
1282:
1281:
1183:japanese quail
1179:indian peafowl
1163:gouldian finch
1119:common kestrel
1064:
1062:
1060:
1052:
1051:
1033:painted turtle
974:
972:
970:
962:
961:
956:
954:
946:
945:
924:
922:
914:
913:
904:
902:
894:
893:
880:
878:
870:
869:
855:Siberian tiger
707:american bison
700:
698:
695:Laurasiatheria
690:
689:
647:naked mole-rat
615:golden hamster
575:Algerian mouse
572:
563:
562:
557:
549:
548:
538:sooty mangabey
442:Angola colobus
439:
432:
425:
418:
400:
397:
350:
347:
281:
278:
171:
168:
120:
119:
108:
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3567:
3565:
3562:
3560:
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3555:
3552:
3550:
3547:
3545:
3542:
3540:
3539:Richard Hynes
3537:
3535:
3532:
3530:
3527:
3525:
3524:Oliver Franks
3522:
3520:
3517:
3515:
3512:
3510:
3507:
3505:
3502:
3500:
3499:Damon Buffini
3497:
3496:
3494:
3490:
3483:
3480:
3477:
3474:
3471:
3468:
3465:
3462:
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3459:
3455:
3448:
3445:
3442:
3439:
3436:
3433:
3430:
3427:
3424:
3421:
3419:Simon Chaplin
3418:
3415:
3412:
3410:
3409:Jeremy Farrar
3407:
3406:
3404:
3400:
3394:
3391:
3389:
3388:Naguib Kheraj
3386:
3384:
3381:
3379:
3378:William Burns
3376:
3373:
3371:
3368:
3366:
3363:
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2991:
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2978:
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2968:
2966:
2965:Pileup format
2963:
2961:
2958:
2956:
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2810:
2808:Organizations
2806:
2800:
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2600:
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2576:
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2562:
2561:Gene Ontology
2558:
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2250:
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2242:
2238:
2234:
2230:
2226:
2219:
2211:
2207:
2202:
2197:
2193:
2189:
2186:(1): bax020.
2185:
2181:
2177:
2169:
2161:
2157:
2152:
2147:
2143:
2139:
2134:
2129:
2125:
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2110:
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2034:
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2022:
2017:
2012:
2008:
2004:
2000:
1996:
1992:
1985:
1977:
1973:
1968:
1963:
1959:
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1951:
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1943:
1936:
1934:
1925:
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1736:
1732:
1731:Aedes aegypti
1728:
1724:
1723:
1719:
1717:
1715:
1713:
1710:
1708:
1707:Invertebrates
1704:
1701:
1700:
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1620:
1616:
1612:
1608:
1604:
1600:
1596:
1592:
1588:
1584:
1580:
1576:
1575:sailfin molly
1572:
1568:
1564:
1560:
1559:rainbow trout
1556:
1552:
1548:
1544:
1543:
1539:
1534:
1530:
1526:
1525:ocean sunfish
1522:
1521:northern pike
1518:
1514:
1510:
1506:
1502:
1501:mexican tetra
1498:
1494:
1490:
1486:
1482:
1478:
1474:
1470:
1466:
1462:
1461:indian medaka
1458:
1454:
1450:
1446:
1442:
1438:
1434:
1430:
1426:
1425:european bass
1422:
1418:
1414:
1413:eastern happy
1410:
1406:
1402:
1398:
1394:
1390:
1386:
1382:
1378:
1374:
1370:
1366:
1362:
1358:
1354:
1350:
1346:
1342:
1341:ballan wrasse
1338:
1334:
1330:
1326:
1325:asian arowana
1322:
1319:
1317:
1315:
1313:
1312:
1308:
1307:
1304:
1303:
1298:
1295:
1293:
1291:
1289:
1288:
1284:
1283:
1280:
1276:
1272:
1268:
1264:
1260:
1256:
1252:
1248:
1244:
1240:
1236:
1232:
1228:
1224:
1220:
1216:
1212:
1208:
1204:
1200:
1196:
1192:
1188:
1184:
1180:
1176:
1172:
1168:
1164:
1160:
1156:
1152:
1148:
1144:
1140:
1136:
1132:
1128:
1124:
1120:
1116:
1115:common canary
1112:
1108:
1104:
1100:
1096:
1092:
1088:
1087:burrowing owl
1084:
1080:
1076:
1072:
1068:
1065:
1063:
1061:
1059:
1058:
1054:
1053:
1050:
1046:
1042:
1038:
1034:
1030:
1026:
1025:komodo dragon
1022:
1018:
1014:
1010:
1006:
1002:
998:
994:
990:
986:
982:
978:
975:
973:
971:
969:
968:
964:
963:
960:
957:
955:
953:
952:
948:
947:
944:
940:
936:
932:
928:
927:Common wombat
925:
923:
921:
920:
916:
915:
912:
908:
905:
903:
901:
900:
896:
895:
892:
888:
884:
881:
879:
877:
876:
872:
871:
868:
864:
860:
856:
852:
848:
844:
840:
836:
832:
828:
824:
820:
816:
812:
808:
804:
800:
796:
792:
788:
784:
780:
776:
772:
768:
764:
760:
756:
752:
748:
744:
740:
736:
732:
728:
724:
720:
719:Arabian camel
716:
715:american mink
712:
708:
704:
701:
699:
697:
696:
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30:
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3647:
3612:Postdoctoral
3569:John Sulston
3564:David Stuart
3544:Anne Johnson
3482:Mark Walport
3446:James Thomas
3393:Fiona Powrie
3276:
3234:
3065:
3053:
2960:Nexus format
2955:NeXML format
2950:FASTQ format
2945:FASTA format
2933:File formats
2695:Institutions
2548:
2400:. Retrieved
2396:the original
2391:
2382:
2347:
2343:
2333:
2290:
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2275:
2232:
2228:
2218:
2183:
2179:
2168:
2123:
2119:
2109:
2097:. Retrieved
2093:the original
2082:
2047:
2043:
2033:
1998:
1994:
1984:
1952:(1): 38–41.
1949:
1945:
1897:
1893:
1883:
1782:
1767:
1747:
1730:
1729:(mosquito),
1726:
1725:(fruitfly),
1720:
1697:
1691:
1680:
1668:
1659:Cyclostomata
1657:
1634:
1536:
1517:Nile tilapia
1417:electric eel
1357:blue tilapia
1353:blind barbel
1329:atlantic cod
1321:Amazon molly
1310:
1300:
1287:Lissamphibia
1285:
1203:muscovy duck
1151:golden eagle
1055:
1021:indian cobra
965:
949:
917:
897:
873:
867:yarkand deer
767:domestic yak
727:beluga whale
693:
679:steppe mouse
671:Ryukyu mouse
663:prairie vole
627:kangaroo rat
566:
552:
518:green monkey
434:
427:
420:
413:
402:
390:
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352:
340:
325:
302:
295:
263:
216:
204:
173:
153:
124:
123:
94:
60:
29:
3559:David Steel
3554:Peter Rigby
3529:Roger Gibbs
3514:Harold Cook
3484:(2003–2013)
3478:(1998–2008)
3472:(1991–1998)
3466:(1965–1991)
3440:Kathy Poole
3437:Nick Moakes
3236:Big Picture
2940:CRAM format
2861:(CSIR-IGIB)
2434:Pre-Ensembl
1733:(mosquito)
1675:), hagfish
1673:sea lamprey
1647:zebra mbuna
1615:tongue sole
1595:spotted gar
1405:common carp
1401:coho salmon
1365:brown trout
1279:zebra finch
1017:green anole
919:Marsupialia
851:sperm whale
783:giant panda
743:Canada lynx
675:shrew mouse
494:mouse lemur
357:and a Perl
137:vertebrates
57:Description
3663:Categories
3614:Fellowship
3606:Fellowship
3549:Roy Porter
3534:Henry Dale
3519:Kay Davies
3449:Ed Whiting
3434:Tim Livett
3422:Alyson Fox
3413:Chris Bird
3374:Alan Brown
3324:UK Biobank
3026:Sequencing
2990:GTF format
2985:GFF format
2980:VCF format
2970:SAM format
2733:(EMBL-EBI)
2659:SOAP suite
2579:VectorBase
2541:BioNumbers
2527:Swiss-Prot
1876:References
1651:zigzag eel
1571:round goby
1547:pike-perch
1397:coelacanth
1259:swan goose
1239:silver-eye
1083:budgerigar
951:Monotremes
875:Afrotheria
827:polar bear
731:blue whale
560:tree shrew
554:Scandentia
466:chimpanzee
317:homologues
309:amino acid
305:karyotypes
274:SARS-CoV-2
184:annotation
176:base pairs
3443:Jim Smith
2853:(ISCB-SC)
2823:(EMBL-AR)
2756:(MPI-CBG)
2497:Databases
2307:1362-4962
2249:1362-4962
2142:1088-9051
1785:CC BY 4.0
1682:Tunicates
1643:zebrafish
1603:tetraodon
1599:swamp eel
1555:platyfish
1513:mummichog
1167:great tit
907:Armadillo
899:Xenarthra
623:guineapig
530:orangutan
231:zebrafish
156:databases
3649:Category
3344:WormBase
3289:Farmcare
3267:DECIPHER
3055:Category
2925:(RECOMB)
2875:Meetings
2829:(EMBnet)
2679:Server:
2654:SAMtools
2649:PANGOLIN
2612:Software
2591:PHI-base
2583:WormBase
2553:InterPro
2402:5 August
2374:15123588
2325:31598706
2267:19033362
2210:28365736
2180:Database
2160:15123590
2099:7 August
2074:19906699
2025:21045057
1976:11752248
1924:31691826
1834:See also
1567:reedfish
1485:lumpfish
1437:goldfish
1311:Teleosts
1079:blue tit
967:Reptilia
959:Platypus
883:Elephant
863:wild yak
819:microbat
791:hedgehog
524:, olive
462:capuchin
458:bushbaby
436:Primates
422:Mammalia
415:Chordata
408:Species
270:COVID-19
259:protists
255:bacteria
227:fruitfly
221:such as
154:Similar
114:.ensembl
3284:Ensembl
3124:Current
3067:Commons
2902:(InCoB)
2847:(ISCB)
2835:(INSDC)
2817:(ASBCB)
2721:(DBCLS)
2715:(COSBI)
2629:Clustal
2575:FlyBase
2549:Ensembl
2523:UniProt
2505:GenBank
2316:6943047
2258:2686571
2201:5467575
2065:2808936
2016:3013672
1915:7145704
1712:Insects
1195:mallard
1091:chicken
1045:tuatara
943:wallaby
935:opossum
859:vaquita
835:red fox
823:narwhal
815:megabat
811:meerkat
799:leopard
763:dolphin
542:tarsier
510:gorilla
490:macaque
386:BioMart
363:scripts
243:metazoa
192:protein
170:History
149:genomic
133:genomes
107:Website
93:Yates,
67:Contact
61:Ensembl
52:Content
18:Ensembl
3309:MEROPS
3252:ChEMBL
3189:Former
2908:(CIBB)
2896:(ISMB)
2890:(ECCB)
2867:(JSBi)
2773:(NBIC)
2762:(NCBI)
2750:(JCVI)
2739:(EMBL)
2727:(DDBJ)
2681:ExPASy
2664:TopHat
2644:MUSCLE
2634:EMBOSS
2624:Bowtie
2599:GISAID
2559:, and
2531:TrEMBL
2372:
2365:479122
2362:
2323:
2313:
2305:
2265:
2255:
2247:
2208:
2198:
2158:
2151:479124
2148:
2140:
2072:
2062:
2023:
2013:
1974:
1964:
1922:
1912:
1870:ENCODE
1619:turbot
1453:huchen
1263:turkey
1187:kakapo
891:tenrec
779:ferret
771:donkey
703:Alpaca
667:rabbit
568:Glires
526:baboon
502:gibbon
498:gelada
454:bonobo
257:, and
247:plants
102:Access
97:(2020)
95:et al.
3278:eLife
2919:(PSB)
2841:(ISB)
2790:(SIB)
2779:(PGC)
2709:(CBD)
2673:Other
2639:HMMER
2619:BLAST
1967:99161
1757:Yeast
1739:Worms
1445:guppy
1057:Birds
931:koala
911:sloth
887:hyrax
843:shrew
839:sheep
795:horse
755:dingo
643:mouse
486:human
482:drill
378:MySQL
334:, or
321:FASTA
313:trees
288:Gene
251:fungi
223:mouse
211:MySQL
180:genes
3319:Rfam
3314:Pfam
2601:and
2567:BOLD
2557:KEGG
2533:and
2515:and
2449:NCBI
2429:Vega
2404:2022
2370:PMID
2321:PMID
2303:ISSN
2263:PMID
2245:ISSN
2206:PMID
2184:2017
2156:PMID
2138:ISSN
2101:2022
2070:PMID
2021:PMID
1972:PMID
1920:PMID
1639:fugu
1275:zebu
1231:ruff
1127:duck
807:lion
775:goat
659:pika
607:degu
290:SGCB
229:and
207:Perl
162:and
160:NCBI
139:and
116:.org
2360:PMC
2352:doi
2311:PMC
2295:doi
2253:PMC
2237:doi
2196:PMC
2188:doi
2146:PMC
2128:doi
2060:PMC
2052:doi
2011:PMC
2003:doi
1962:PMC
1954:doi
1910:PMC
1902:doi
1641:),
1139:emu
831:pig
825:,
759:dog
751:cow
747:cat
725:,
655:rat
393:FTP
359:API
355:API
336:PSL
332:BED
328:BAM
196:DNA
194:to
190:of
112:www
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