1847:
94:(T), completing a C to T substitution path. Such errors tend to occur towards the ends of molecules, accumulate with time, and can be significant in specimens a century-old or later. Robust genomic and statistical techniques are needed to rigorously detect and avoid errors and genotyping uncertainties when carrying out analyses based on museum collections. Optimal methods for working with hDNA and aDNA can differ as a result of differences in their DNA degradation history.
1809:
1413:
1835:
1424:
97:
Museomics also involves destructive sampling, irreversibly removing parts of sometimes rare specimens to obtain DNA. This can be contentious for curators and collection staff, involving a variety of ethical issues around the handling and destruction of objects, colonial acquisition and repatriation
65:
specimens, which can be used for genome-scale examinations of species, their evolution, and their responses to environmental change. Ancient DNA provides a unique window into genetic change over time. It enables scientists to directly study evolutionary and ecological processes, comparing ancient
77:
However, museum specimens can be poorly preserved and are subject to degradation and contamination. Genomic analyses face considerable challenges as a result of the highly degraded DNA typical of museum specimens. DNA from such samples is often subject to post-mortem nucleotide damage such as the
636:
Guschanski, Katerina; Krause, Johannes; Sawyer, Susanna; Valente, Luis M.; Bailey, Sebastian; Finstermeier, Knut; Sabin, Richard; Gilissen, Emmanuel; Sonet, Gontran; Nagy, Zoltán T.; Lenglet, Georges; Mayer, Frieder; Savolainen, Vincent (1 July 2013).
509:
Strijk, Joeri S.; Binh, HoĂ ng Thi; Ngoc, Nguyen Van; Pereira, Joan T.; Slik, J. W. Ferry; Sukri, Rahayu S.; Suyama, Yoshihisa; Tagane, Shuichiro; Wieringa, Jan J.; Yahara, Tetsukazu; Hinsinger, Damien D. (22 May 2020).
98:
practices, and present-day social and political implications of research. Museums, universities and journals are increasingly developing ethics statements, best practices and guidelines for such work.
579:"Museomics Unveil the Phylogeny and Biogeography of the Neglected Juan Fernandez Archipelago Megalachne and Podophorus Endemic Grasses and Their Connection With Relict Pampean-Ventanian Fescues"
50:(HTS) methods can be applied to the analysis of genetic datasets extracted from collections materials. Such techniques have been described as a "third revolution in sequencing technology". Like
54:, the techniques of museomics are a transformative technology. Results are revising and sometimes overturning previously accepted theories about a wide variety of topics such as the
749:
252:
Besnard, Guillaume; Christin, Pascal-Antoine; Malé, Pierre-Jean G.; Lhuillier, Emeline; Lauzeral, Christine; Coissac, Eric; Vorontsova, Maria S. (1 December 2014).
1647:
980:
1672:
1794:
1369:
849:
707:"Do herbarium specimens collected by Banks and Solander during Cook's voyage around New Zealand in 1769-70 contain DNA?"
1652:
1496:
1667:
1461:
990:
577:
Moreno-Aguilar, MarĂa
Fernanda; Arnelas, Itziar; Sánchez-RodrĂguez, Aminael; Viruel, Juan; Catalán, Pilar (2020).
1887:
405:
117:
1376:
889:
145:
1897:
445:
Bi, Ke; Linderoth, Tyler; Vanderpool, Dan; Good, Jeffrey M.; Nielsen, Rasmus; Moritz, Craig (December 2013).
1892:
1753:
1398:
1108:
995:
750:"Ancient DNA is a powerful tool for studying the past – when archaeologists and geneticists work together"
302:
1839:
1331:
1174:
1103:
944:
43:
1882:
1825:
1501:
884:
512:"Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea"
55:
47:
774:
Card, Daren C.; Shapiro, Beth; Giribet, Gonzalo; Moritz, Craig; Edwards, Scott V. (23 November 2021).
1657:
1642:
1218:
1206:
1072:
1012:
965:
842:
87:
1662:
1481:
1240:
1133:
1082:
1032:
1022:
66:
and modern populations, identifying distinct populations, and revealing patterns of change such as
1346:
1271:
1169:
1047:
39:
700:
1454:
1391:
1381:
1301:
1296:
1266:
1245:
1118:
1113:
1077:
866:
1789:
1623:
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1386:
1306:
1062:
975:
970:
960:
301:
van Dijk, Erwin L.; Jaszczyszyn, Yan; Naquin, Delphine; Thermes, Claude (1 September 2018).
74:. Research may be used to identify isolated populations and inform conservation priorities.
1688:
1506:
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1276:
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223:
8:
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71:
35:
792:
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527:
462:
380:
207:
1867:
1728:
1613:
1608:
1583:
1291:
1154:
813:
671:
613:
578:
554:
511:
479:
338:
254:"From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition"
176:
51:
31:
1877:
1812:
1743:
1733:
1723:
1557:
1447:
1341:
1336:
1321:
817:
805:
797:
722:
676:
658:
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559:
541:
484:
330:
322:
283:
275:
227:
180:
168:
706:
342:
1773:
1748:
1326:
1261:
1228:
939:
924:
787:
730:
702:
666:
650:
608:
590:
549:
531:
474:
466:
413:
384:
314:
265:
219:
160:
365:"Divided by DNA: The uneasy relationship between archaeology and ancient genomics"
1633:
1164:
1017:
919:
536:
62:
1902:
1763:
1703:
1603:
1428:
1233:
1223:
1184:
1159:
929:
389:
364:
164:
639:"Next-Generation Museomics Disentangles One of the Largest Primate Radiations"
418:
318:
1861:
1201:
801:
726:
662:
604:
545:
326:
279:
231:
734:
654:
595:
576:
1872:
1713:
1593:
1052:
899:
809:
680:
622:
563:
488:
334:
287:
172:
1693:
1128:
1007:
879:
858:
270:
253:
146:"Mining museums for historical DNA: advances and challenges in museomics"
67:
27:
1698:
1567:
1547:
1522:
1191:
1123:
208:"Using Ancient DNA to Understand Evolutionary and Ecological Processes"
112:
90:
amplification of damaged templates can further substitute uracils with
470:
1179:
1138:
34:. Early research in this area focused on short sequences of DNA from
446:
1738:
1708:
1552:
1542:
1470:
934:
107:
79:
23:
1000:
718:
447:"Unlocking the vault: next-generation museum population genomics"
144:
Raxworthy, Christopher J.; Smith, Brian
Tilston (November 2021).
91:
300:
1834:
1562:
1537:
711:
Tuhinga: Records of the Museum of New
Zealand Te Papa Tongarewa
83:
827:
635:
251:
1439:
1532:
1527:
444:
773:
748:
Sawchuk, Elizabeth; Prendergast, Mary (March 11, 2019).
1823:
508:
981:
Conservation and restoration of archaeological sites
212:
Annual Review of
Ecology, Evolution, and Systematics
61:
Museum collections contain unique resources such as
206:Orlando, Ludovic; Cooper, Alan (23 November 2014).
747:
1859:
303:"The Third Revolution in Sequencing Technology"
143:
1455:
843:
570:
205:
16:Study of genomic data from museum collections
30:(aDNA) and historic DNA (hDNA) specimens in
139:
137:
135:
133:
1462:
1448:
850:
836:
629:
791:
670:
612:
594:
553:
535:
478:
417:
388:
269:
201:
199:
197:
362:
130:
1795:List of genetics research organizations
741:
701:Lara Dawn Shepherd; Matt Hendrik Buys;
356:
294:
1860:
245:
194:
1443:
831:
705:; Antony Kusabs; Leon Perrie (2020).
502:
403:
224:10.1146/annurev-ecolsys-120213-091712
767:
440:
438:
436:
406:"The tale of the domesticated horse"
397:
793:10.1146/annurev-genet-071719-020506
13:
14:
1914:
433:
153:Trends in Ecology & Evolution
1845:
1833:
1808:
1807:
1422:
1412:
1411:
363:Callaway, Ewen (28 March 2018).
857:
694:
118:List of omics topics in biology
258:Journal of Experimental Botany
1:
123:
1754:Missing heritability problem
1469:
996:electrical resistance survey
537:10.1371/journal.pone.0232936
7:
404:Dance, Amber (4 May 2022).
101:
10:
1919:
885:Johann Joachim Winckelmann
583:Frontiers in Plant Science
390:10.1038/d41586-018-03773-6
165:10.1016/j.tree.2021.07.009
78:hydrolytic deamination of
56:domestication of the horse
48:high-throughput sequencing
44:Next-generation sequencing
1803:
1782:
1681:
1632:
1576:
1515:
1477:
1407:
1359:
1254:
1147:
1091:
1040:
1031:
966:Philosophy of archaeology
953:
865:
780:Annual Review of Genetics
419:10.1146/knowable-050422-1
319:10.1016/j.tig.2018.05.008
596:10.3389/fpls.2020.00819
1888:Methods in archaeology
1790:List of genetic codes
976:Archaeological ethics
971:Archaeological diving
961:Archaeological theory
655:10.1093/sysbio/syt018
42:has become possible.
1898:Analytical chemistry
1840:Evolutionary biology
1689:Behavioural genetics
915:Augustus Pitt Rivers
910:William Henry Holmes
875:Archaeological sites
38:, but sequencing of
1893:Ancient DNA (human)
1769:Population genomics
1759:Molecular evolution
1719:Genetic engineering
905:John Lloyd Stephens
895:Heinrich Schliemann
528:2020PLoSO..1532936S
463:2013MolEc..22.6018B
381:2018Natur.555..573C
36:mitochondrial genes
26:data obtained from
1729:Genetic monitoring
1429:History portal
991:geophysical survey
643:Systematic Biology
307:Trends in Genetics
271:10.1093/jxb/eru395
52:radiocarbon dating
32:museum collections
1883:Genetic genealogy
1821:
1820:
1744:He Jiankui affair
1734:Genetic genealogy
1724:Genetic diversity
1653:the British Isles
1558:Genetic variation
1437:
1436:
1355:
1354:
1337:Pseudoarchaeology
954:Method and theory
776:"Museum Genomics"
471:10.1111/mec.12516
457:(24): 6018–6032.
451:Molecular Ecology
410:Knowable Magazine
375:(7698): 573–576.
264:(22): 6711–6721.
159:(11): 1049–1060.
1910:
1850:
1849:
1848:
1838:
1837:
1829:
1811:
1810:
1774:Reverse genetics
1749:Medical genetics
1464:
1457:
1450:
1441:
1440:
1427:
1426:
1425:
1415:
1414:
1262:Archaeoastronomy
1229:Paleoethnobotany
1038:
1037:
940:Alfred V. Kidder
925:Mortimer Wheeler
852:
845:
838:
829:
828:
822:
821:
795:
771:
765:
764:
762:
760:
754:The Conversation
745:
739:
738:
703:Carlos Lehnebach
698:
692:
691:
689:
687:
674:
633:
627:
626:
616:
598:
574:
568:
567:
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539:
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395:
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360:
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351:
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298:
292:
291:
273:
249:
243:
242:
240:
238:
203:
192:
191:
189:
187:
150:
141:
22:is the study of
1918:
1917:
1913:
1912:
1911:
1909:
1908:
1907:
1858:
1857:
1856:
1846:
1844:
1832:
1824:
1822:
1817:
1799:
1778:
1677:
1668:the Middle East
1634:Archaeogenetics
1628:
1572:
1511:
1473:
1468:
1438:
1433:
1423:
1421:
1403:
1351:
1250:
1165:Archaeogenetics
1143:
1087:
1033:Sub-disciplines
1027:
1023:Post-excavation
1018:Lithic analysis
949:
920:Flinders Petrie
861:
856:
826:
825:
772:
768:
758:
756:
746:
742:
699:
695:
685:
683:
634:
630:
575:
571:
522:(5): e0232936.
507:
503:
493:
491:
443:
434:
424:
422:
402:
398:
361:
357:
347:
345:
299:
295:
250:
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236:
234:
204:
195:
185:
183:
148:
142:
131:
126:
104:
63:natural history
17:
12:
11:
5:
1916:
1906:
1905:
1900:
1895:
1890:
1885:
1880:
1875:
1870:
1855:
1854:
1842:
1819:
1818:
1816:
1815:
1804:
1801:
1800:
1798:
1797:
1792:
1786:
1784:
1780:
1779:
1777:
1776:
1771:
1766:
1764:Plant genetics
1761:
1756:
1751:
1746:
1741:
1736:
1731:
1726:
1721:
1716:
1711:
1706:
1704:Genome editing
1701:
1696:
1691:
1685:
1683:
1682:Related topics
1679:
1678:
1676:
1675:
1670:
1665:
1660:
1655:
1650:
1645:
1639:
1637:
1630:
1629:
1627:
1626:
1621:
1616:
1611:
1606:
1604:Immunogenetics
1601:
1596:
1591:
1586:
1580:
1578:
1574:
1573:
1571:
1570:
1565:
1560:
1555:
1550:
1545:
1540:
1535:
1530:
1525:
1519:
1517:
1516:Key components
1513:
1512:
1510:
1509:
1504:
1499:
1494:
1489:
1484:
1478:
1475:
1474:
1467:
1466:
1459:
1452:
1444:
1435:
1434:
1432:
1431:
1419:
1408:
1405:
1404:
1402:
1401:
1396:
1395:
1394:
1392:Assyriologists
1389:
1382:Archaeologists
1379:
1374:
1373:
1372:
1363:
1361:
1357:
1356:
1353:
1352:
1350:
1349:
1344:
1339:
1334:
1329:
1324:
1319:
1314:
1309:
1304:
1299:
1294:
1289:
1284:
1279:
1274:
1269:
1264:
1258:
1256:
1252:
1251:
1249:
1248:
1243:
1238:
1237:
1236:
1234:Zooarchaeology
1231:
1226:
1224:Geoarchaeology
1216:
1215:
1214:
1209:
1204:
1194:
1189:
1188:
1187:
1185:Paleopathology
1182:
1177:
1172:
1167:
1160:Bioarchaeology
1157:
1151:
1149:
1148:Methodological
1145:
1144:
1142:
1141:
1136:
1131:
1126:
1121:
1116:
1111:
1106:
1101:
1095:
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1089:
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1065:
1060:
1055:
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1044:
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1035:
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1026:
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1015:
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1005:
1004:
1003:
998:
993:
983:
978:
973:
968:
963:
957:
955:
951:
950:
948:
947:
942:
937:
932:
930:Dorothy Garrod
927:
922:
917:
912:
907:
902:
897:
892:
887:
882:
880:Antiquarianism
877:
871:
869:
863:
862:
855:
854:
847:
840:
832:
824:
823:
786:(1): 633–659.
766:
740:
693:
649:(4): 539–554.
628:
569:
501:
432:
396:
355:
313:(9): 666–681.
293:
244:
218:(1): 573–598.
193:
128:
127:
125:
122:
121:
120:
115:
110:
103:
100:
86:(U) residues.
15:
9:
6:
4:
3:
2:
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1476:
1472:
1465:
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1453:
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1446:
1445:
1442:
1430:
1420:
1418:
1410:
1409:
1406:
1400:
1397:
1393:
1390:
1388:
1387:Egyptologists
1385:
1384:
1383:
1380:
1378:
1375:
1371:
1368:
1367:
1365:
1364:
1362:
1358:
1348:
1345:
1343:
1340:
1338:
1335:
1333:
1332:Phenomenology
1330:
1328:
1325:
1323:
1320:
1318:
1315:
1313:
1310:
1308:
1305:
1303:
1300:
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1275:
1273:
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1268:
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1263:
1260:
1259:
1257:
1253:
1247:
1244:
1242:
1239:
1235:
1232:
1230:
1227:
1225:
1222:
1221:
1220:
1219:Environmental
1217:
1213:
1210:
1208:
1207:Computational
1205:
1203:
1202:Archaeogaming
1200:
1199:
1198:
1195:
1193:
1190:
1186:
1183:
1181:
1178:
1176:
1173:
1171:
1168:
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1135:
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1127:
1125:
1122:
1120:
1117:
1115:
1112:
1110:
1107:
1105:
1102:
1100:
1097:
1096:
1094:
1090:
1084:
1081:
1079:
1076:
1074:
1073:Post-Medieval
1071:
1069:
1066:
1064:
1061:
1059:
1056:
1054:
1053:Protohistoric
1051:
1049:
1046:
1045:
1043:
1041:Chronological
1039:
1036:
1034:
1030:
1024:
1021:
1019:
1016:
1014:
1011:
1009:
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1002:
999:
997:
994:
992:
989:
988:
987:
984:
982:
979:
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964:
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921:
918:
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913:
911:
908:
906:
903:
901:
898:
896:
893:
891:
890:Richard Hoare
888:
886:
883:
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1852:Paleontology
1714:Genetic code
1648:the Americas
1624:Quantitative
1594:Cytogenetics
1589:Conservation
1482:Introduction
1267:Archaeometry
1241:Experimental
1175:Near Eastern
1134:Near Eastern
1129:Mesopotamian
1083:Contemporary
900:Arthur Evans
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1694:Epigenetics
1347:Transgender
1272:Battlefield
1048:Prehistoric
1008:Burnt layer
945:George Bass
859:Archaeology
721:: 113–119.
68:extinctions
28:ancient DNA
1862:Categories
1699:Geneticist
1673:South Asia
1619:Population
1599:Ecological
1568:Amino acid
1548:Nucleotide
1523:Chromosome
1370:by country
1302:Industrial
1297:Indigenous
1246:Underwater
1192:Calceology
1114:Australian
1092:Geographic
1078:Historical
1013:Excavation
735:Q106839643
124:References
113:Proteomics
72:migrations
46:(NGS) and
1868:Museology
1614:Molecular
1609:Microbial
1584:Classical
1307:Landscape
1180:Osteology
1063:Classical
818:237616302
802:0066-4197
727:1173-4337
663:1063-5157
605:1664-462X
546:1932-6203
327:0168-9525
280:0022-0957
232:1543-592X
181:239687836
20:Museomics
1878:Genetics
1813:Category
1739:Heredity
1709:Genomics
1553:Mutation
1543:Heredity
1507:Glossary
1497:Timeline
1471:Genetics
1417:Category
1399:Journals
1317:Mortuary
1312:Maritime
1287:Funerary
1282:Feminist
1277:Conflict
1255:Thematic
1170:Medieval
1124:Egyptian
1119:Oceanian
1104:American
1068:Medieval
1058:Biblical
935:Max Uhle
810:34555285
731:Wikidata
681:23503595
623:32754167
564:32442164
516:PLOS ONE
489:24118668
343:49408925
335:29941292
288:25258360
173:34456066
108:Genomics
102:See also
80:cytosine
1826:Portals
1492:History
1487:Outline
1377:Periods
1212:Virtual
1197:Digital
1099:African
1001:Sondage
867:History
759:27 June
719:Te Papa
686:28 June
672:3676678
614:7333454
589:: 819.
555:7244142
524:Bibcode
494:27 June
480:4134471
459:Bibcode
377:Bibcode
348:27 June
237:27 June
186:27 June
92:thymine
82:(C) to
24:genomic
1658:Europe
1643:Africa
1577:Fields
1563:Allele
1538:Genome
1366:Sites
1292:Gender
1155:Aerial
1139:Nubian
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425:18 May
369:Nature
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84:uracil
1903:Omics
1783:Lists
1663:Italy
1502:Index
1360:Lists
1342:Queer
1322:Music
1109:Asian
814:S2CID
339:S2CID
177:S2CID
149:(PDF)
1327:Nazi
806:PMID
798:ISSN
761:2022
723:ISSN
688:2022
677:PMID
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323:ISSN
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169:PMID
70:and
1873:DNA
1533:RNA
1528:DNA
788:doi
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