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Stuart Kauffman

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organisms are attractors. In 1971 he suggested that a zygote may not be able to access all the cell type attractors in its gene regulatory network during development and that some of the developmentally inaccessible cell types might be cancer cell types. This suggested the possibility of "cancer differentiation therapy". He also proposed the self-organized emergence of collectively
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to investigate generic self-organizing properties of gene regulatory networks, proposing that cell types are dynamical attractors in gene regulatory networks and that cell differentiation can be understood as transitions between attractors. Recent evidence suggests that cell types in humans and other
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and the fitness contributions are chosen randomly. His analytical estimate of the number of local optima was later shown to be flawed. However, numerical experiments included in Weinberger's analysis support his analytical result that the expected fitness of a string is normally distributed with a
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Dadon, Z.; Wagner, N.; Cohen-Luria, R.; Ashkenasy, G. (2012). "Reaction Networks. Wagner and Askkenazy's (2008) results demonstrate that molecular replication need not be based on DNA or RNA template replication, still the dominate view for the origin of life". In Gale, P. A.; Steed J. W. (eds.).
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Stuart Kauffman explains how life evolved from its earlier origins some 3,700 million years ago through the story of four protocells—Patrick, Rupert, Sly and Gus. He explains why our knowledge of the origins and early evolution of life can greatly help us understand our true place in the
2225: 1218:. He published on this topic in his paper "Answering Descartes: beyond Turing". With Giuseppe Longo and Maël Montévil, he wrote (January 2012) "No Entailing Laws, But Enablement in the Evolution of the Biosphere", which argued that evolution is not "law entailed" like physics. 1266:
In 2017, exploring the concept that reality consists of both ontologically real "possibles" (res potentia) and ontologically real "actuals" (res extensa), Kauffman co-authored, with Ruth Kastner and Michael Epperson, "Taking Heisenberg's Potentia Seriously".
2263: 2422: 1225:, including "Beyond the Stalemate: Mind/Body, Quantum Mechanics, Free Will, Possible Panpsychism, Possible Solution to the Quantum Enigma" (October 2014) and "Quantum Criticality at the Origin of Life" (February 2015). 368:. He was an iCORE (Informatics Research Circle of Excellence) chair and the director of the Institute for Biocomplexity and Informatics. Kauffman was also invited to help launch the Science and Religion initiative at 1183:
but which do not simply self-organize. Some biologists and physicists working in Kauffman's area have questioned his claims about self-organization and evolution. A case in point is some comments in the 2001 book
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In 2016, Kauffman wrote a children's story, "Patrick, Rupert, Sly & Gus Protocells", a narrative about unprestatable niche creation in the biosphere, which was later produced as a short animated video.
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models in physics, Kauffman invented "N-K" fitness landscapes, which have found applications in biology and economics. In related work, Kauffman and colleagues have examined subcritical, critical, and
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In May 2013 he joined the Institute for Systems Biology, in Seattle, Washington. Following the death of his wife, Kauffman cofounded Transforming Medicine: The Elizabeth Kauffman Institute.
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Visualization of two dimensions of a NK fitness landscape. The arrows represent various mutational paths that the population could follow while evolving on the fitness landscape.
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Kauffman, Stuart (October 2014). "Beyond the Stalemate: Conscious Mind-Body - Quantum Mechanics - Free Will - Possible Panpsychism - Possible Interpretation of Quantum Enigma".
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Hanel, R.; Kauffman, S. A.; Thurner, S. (2007). "Towards a Physics of Evolution: Critical Diversity Dynamics at the Edges of Collapse and Bursts of Diversification".
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between 1987 and 1992. He also holds an Honorary Degree in Science from the University of Louvain (1997); He was awarded the Norbert Wiener Memorial Gold Medal for
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Huang, S.; Kauffman, S. A. (2009). "Complex Gene Regulatory Networks - from Structure to Biological Observables: Cell Fate Determination". In Meyers, R. A. (ed.).
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in Rome in 1990, the Trotter Prize for Information and Complexity in 2001, and the Herbert Simon award for Complex Systems in 2013. He became a Fellow of the
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faculty where he continued his work for two years with UVM's Complex Systems Center. From early 2011 to April 2013, Kauffman was a regular contributor to the
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Fitness values are defined according to the specific incarnation of the model, but the key feature of the NK model is that the fitness of a given string
2956: 2243: 379:, Department of Signal Processing. The appointment ended in December, 2012. The subject of the FiDiPro research project is the development of delayed 406:
Blog 13.7, Cosmos and Culture, with topics ranging from the life sciences, systems biology, and medicine, to spirituality, economics, and the law.
2248: "Method of identifying a stochastically-generated peptide, polypeptide, or protein having ligand binding property and compositions thereof" 1610: 191: 101: 2976: 3316: 1286:(Technical report). Quarterly Progress Report 34. Cambridge, MA: Research Laboratory of Electronics, Massachusetts Institute of Technology. 2299: 3860: 2351: 2321: 644: 3005: 3845: 935: 247: 72: 3539: 3357: 3201: 3135: 3061: 2089: 2070: 2051: 1986: 1906:
Vattay, G.; Salahub, D.; Csaibai, I.; Nassmi, A.; Kauffman, S. (February 2015). "Quantum Criticality at the Origin of Life".
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Longo, G.; Montévil, M.; Kauffman, S. (January 2012). "No entailing laws, but enablement in the evolution of the biosphere".
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Kauffman, S. A. (1971a). "Cellular Homeostasis, Epigenesis, and Replication in Randomly Aggregated Macromolecular Systems".
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Kauffman has contributed to the emerging field of cumulative technological evolution by introducing a mathematics of the
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in biological sciences, physics, and astronomy. He was also an adjunct professor in the Department of Philosophy at the
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Weinberger, Edward (November 15, 1991). "Local properties of Kauffman's N-k model: A tunably rugged energy landscape".
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Nykter, M.; Price, N. D.; Aldana, M.; Ramsey, S. A.; Kauffman, S. A.; Hood, L.; Yli-Harja, O.; Shmulevich, I. (2008).
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Kauffman is best known for arguing that the complexity of biological systems and organisms might result as much from
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Chialvo, D. R. (2013). "Critical Brain Dynamics at Large Scale". In Plenz D.; Niebur, E.; Schuster H. G. (eds.).
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Camazine, Scott; Deneubourg, Jean-Louis; Franks, Nigel R.; Sneyd, James; Theraulaz, Guy; Bonabeau, Eric (2001).
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He is best known for arguing that the complexity of biological systems and organisms might result as much from
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is an extended criticism of Kauffman's model of self-organization in relation to gene regulatory networks.
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and issues in neuroscience, proposing attributes of a new "poised realm" that hovers indefinitely between
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Kastner, Ruth E.; Kauffman, Stuart; Epperson, Michael (2019). "Taking Heisenberg's Potentia Seriously".
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In 2015, he was invited to help initiate a general a discussion on rethinking economic growth for the
3350: 1698:"Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation" 2451: 1470: 1291:
Kauffman, Stuart (1969). "Metabolic stability and epigenesis in randomly constructed genetic nets".
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Dadon, Z.; Wagner, N.; Ashkenasy, G. (2008). "The Road to Non-Enzymatic Molecular Networks".
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In 2014, Kauffman with Samuli Niiranen and Gabor Vattay was issued a founding patent on the
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professor of biochemistry at the University of Pennsylvania and affiliate faculty at the
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Monechi, Bernardo; Ruiz-Serrano, Álvaro; Tria, Francesca; Loreto, Vittorio (June 2017).
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from 1969 to 1973, the National Cancer Institute from 1973 to 1975, and then at the
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At Home in the Universe: The Search for Laws of Self-Organization and Complexity
286:), where he was faculty in residence from 1986 to 1997, and through his work on 3744: 3704: 3699: 3674: 3649: 3619: 3554: 3549: 3544: 3529: 3481: 3426: 3386: 3053: 2479:"Economic opportunity and evolution: Beyond landscapes and bounded rationality" 1870:"Economic Opportunity and Evolution: Beyond Landscapes and Bounded Rationality" 1593: 1496: 420: 375:
In January 2009 Kauffman became a Finland Distinguished Professor (FiDiPro) at
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Ingenious Genes: How Gene Regulation Networks Evolve to Control Development
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Ingenious Genes: How Gene Regulation Networks Evolve To Control Development
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Ingenious Genes: How Gene Regulation Networks Evolve to Control Development
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Kauffman, S. A. (1971b). "Differentiation of Malignant to Benign Cells".
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and the contribution from each locus in general depends on the value of
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Tria, F.; Loreto, V.; Servedio, V. D. P.; Strogatz, S. H. (July 2014).
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Science and Ultimate Reality: Quantum Theory, Cosmology, and Complexity
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In 1991, Weinberger published a detailed analysis of the case in which
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A talk at the New England Complex Systems Institute, January 28, 2019.
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Felin, Teppo; Kauffman, Stuart; Koppl, Roger; Longo, Giuseppe (2014).
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Reinventing the Sacred: A New View of Science, Reason, and Religion
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Reinventing the Sacred: A New View of Science, Reason, and Religion
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Huang, S.; Hu, L.; Kauffman, S.; Zhang, W.; Shmulevich, I. (2009).
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The Origins of Order: Self Organization and Selection in Evolution
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Kauffman, Stuart (2004). "Prolegomenon to a General Biology". In
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Kauffman, Stuart; Hill, Colin; Hood, Leroy; Huang, Sui (2014b).
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Felin, T.; Kauffman, S.; Koppl, R.; Longo, G. (December 2014).
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Kauffman, S. (2016). "Answering Descartes: Beyond Turing". In
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methodology to business problems. BiosGroup was acquired by
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From 2005 to 2009 Kauffman held a joint appointment at the
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Kauffman's work translates his biological findings to the
3299:"Thinker of Untold Dreams: A Portrait of Stuart Kauffman" 3128:
Supramolecular Chemistry: From Molecules to Nanomaterials
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is defined between strings, the resulting structure is a
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in 1968. After completing his internship, he moved into
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Adventures in Quantumland: Exploring Our Unseen Reality
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Kauffman became known through his association with the
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Kauffman narrates the story in 2017 here: Archived at
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approach has been criticized for ignoring the role of
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and far-from-equilibrium dynamics as from Darwinian
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of the fruit fly, holding appointments first at the
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and far-from-equilibrium dynamics as from Darwinian
2177: 2117: 881:{\displaystyle f(S_{i},S_{1}^{i},\dots ,S_{K}^{i})} 2039: 2016: 1103: 993: 923: 880: 799: 772: 737: 630: 607: 540: 513: 472: 3147:"Organizational Sticking Points on NK Landscapes" 2111: 1495:Kauffman, Stuart (2004). "Autonomous Agents". In 1281: 262:from 1975 to 1994, where he rose to professor of 3802: 1235:He has published over 350 articles and 6 books: 1167:. With respect to molecular biology, Kauffman's 3144: 3011:"The origins of life and its continuing wonder" 2752: 2740: 2358:. Vermont Business Magazine. September 30, 2009 2300:"Netezza Corporation Acquires NuTech Solutions" 1440: 3871:University of California, San Francisco alumni 3211:Goldstein, Jeffrey A. (2008). "Book Review of 3145:Rivkin, J. W.; Siggelkow, N. (May–June 2002). 2504: 1743:Encyclopedia of Complexity and Systems Science 1104:{\displaystyle {{(k+1)\sigma ^{2}} \over {N}}} 3351: 2135: 1740: 1551:"Beyond reductionism: Reinventing The Sacred" 780:are the other loci upon which the fitness of 423:. Around the same time, he did research with 229: 3366:Subfields of and cyberneticians involved in 521:is the sum of contributions from each locus 1762:"Approaches to the Origin of Life on Earth" 3358: 3344: 2510: 1282:Kauffman, S. A.; McCulloch, W. S. (1967). 1179:in cells, which can fairly be called self- 480:. For each string in this search space, a 31: 3043: 3000:An animated version is here: Archived at 2931: 2921: 2870: 2844: 2725: 2587: 2328:. IBM. September 20, 2010. Archived from 2171: 2159: 1919: 1858: 1818: 1795: 1785: 1723: 1713: 1678: 1668: 1549:Kauffman, Stuart A. (November 12, 2006). 1469: 1350: 1329: 1114: 734: 372:; serving as visiting professor in 2009. 3217:Emergence: Complexity & Organization 2812: 2788: 2183: 2123: 1952: 1852: 1759: 1611:"Why Humanity Needs a God of Creativity" 1290: 438: 209:(1993). In 1967 and 1969 he used random 186:. He has a number of awards including a 2678:10.7551/mitpress/9780262195812.001.0001 2605:Self-Organization in Biological Systems 1186:Self-Organization in Biological Systems 608:{\displaystyle F(S)=\sum _{i}f(S_{i}),} 345:-based for-profit company that applied 248:University of California, San Francisco 73:University of California, San Francisco 3803: 2827:"The dynamics of correlated novelties" 2663: 2375: 2373: 238:in 1960, was awarded the BA (Hons) by 16:American medical doctor & academic 3339: 3019:. Science Animated. August 24, 2020. 1908:Journal of Physics: Conference Series 1221:Kauffman's work is posted on Physics 434: 2701: 1830:"Transforming Medicine: A Manifesto" 1441:Kauffman, S. A.; Johnsen, S (1991). 398:In January 2010 Kauffman joined the 353:in early 2003. NuTech was bought by 3269:Paulson, Steve (November 9, 2008). 2801:Longo, MontĂ©vil & Kauffman 2012 2553: 2370: 1532:Debating Design: From Darwin to DNA 13: 3185: 2969:from the original on May 27, 2020. 2777:Hanel, Kauffman & Thurner 2007 2702:Wray, Gregory A. (December 2012). 2486:Strategic Entrepreneurship Journal 2196:Dadon, Wagner & Ashkenasy 2008 1878:Strategic Entrepreneurship Journal 14: 3887: 3861:Writers from Santa Fe, New Mexico 3291: 3250:MacKenzie, Dana (February 2002). 3228:Horgan, John (February 4, 2015). 2280:. BusinessWire. February 20, 2003 1503:; Harper, Charles L. Jr. (eds.). 1419:10.1038/scientificamerican0891-78 93:, adjacent possible, poised realm 2554:Fox, Ronald F. (December 1993). 1609:Kauffman, Stuart (May 7, 2008). 1388:Kauffman, Stuart (August 1991). 1001:and a variance of approximately 924:{\displaystyle 1<<k\leq N} 377:Tampere University of Technology 3846:Extended evolutionary synthesis 3437:Cybernetics in the Soviet Union 3027: 2948: 2887: 2818: 2704:"Adaptation and Gene Networks: 2657: 2596: 2547: 2470: 2444: 2410: 2344: 2314: 2292: 2270: 2251: 2232: 2213: 2063:Humanity in a Creative Universe 1270: 1253:Humanity in a Creative Universe 1127:in 1973, the Gold Medal of the 1938:10.1088/1742-6596/626/1/012023 1534:. Cambridge University Press. 1507:. Cambridge University Press. 1450:Journal of Theoretical Biology 1353:Journal of Theoretical Biology 1294:Journal of Theoretical Biology 1203:behavior in economic systems. 1095: 1092: 1080: 1071: 1059: 1041: 1023: 1011: 973: 961: 875: 820: 728: 673: 664: 651: 599: 586: 567: 561: 453:Kauffman's NK model defines a 1: 3194:Criticality in Neural Systems 3089: 2580:10.1016/s0006-3495(93)81321-3 2112:Kauffman & McCulloch 1967 1965:. Cambridge University Press. 1834:Scientific American Worldview 1629:10.1016/s0262-4079(08)61171-9 1480:10.1016/s0022-5193(05)80094-3 184:Institute for Systems Biology 37:Stuart Kauffman in April 2010 3130:. John Wiley and Sons, Ltd. 2954:The story can be read here: 2923:10.1371/journal.pone.0179303 2452:"Rethinking Economic Growth" 2302:. BusinessWire. May 15, 2008 1373:10.1016/0022-5193(71)90020-8 1315:10.1016/0022-5193(69)90015-0 810:Hence, the fitness function 490:) is defined. If a distance 166:. He was a professor at the 7: 3831:American systems scientists 2753:Rivkin & Siggelkow 2002 2741:Kauffman & Johnsen 1991 2084:. Oxford University Press. 2065:. Oxford University Press. 2023:. Oxford University Press. 2000:. Oxford University Press. 1981:. Oxford University Press. 1284:Random Nets of Formal Genes 1188:. Roger Sansom's 2011 book 385:genetic regulatory networks 357:in 2008, and later by IBM. 205:, as discussed in his book 158:researcher who studies the 10: 3892: 3836:Complex systems scientists 3417:Computational neuroscience 3054:10.1142/9781786346421_0011 2609:Princeton University Press 1963:The Once and Future Turing 1594:10.1103/physreve.76.036110 1390:"Antichaos and Adaptation" 892:between strings of length 446: 260:University of Pennsylvania 230:Education and early career 172:University of Pennsylvania 132:University of Pennsylvania 3866:Santa Fe Institute people 3500: 3374: 3252:"The Science of Surprise" 2727:10.1525/bio.2012.62.12.10 2136:Huang & Kauffman 2009 2080:Kauffman, Stuart (2019). 2061:Kauffman, Stuart (2016). 2038:Kauffman, Stuart (2008). 2015:Kauffman, Stuart (2000). 1996:Kauffman, Stuart (1995). 1977:Kauffman, Stuart (1993). 1344:10.1080/01969727108545830 773:{\displaystyle S_{j}^{i}} 273: 141: 123: 116: 97: 78: 60: 42: 30: 23: 3841:Dartmouth College alumni 3590:Charles Geoffrey Vickers 3477:Second-order cybernetics 2533:10.1103/physreva.44.6399 2322:"IBM to Acquire Netezza" 2099: 1760:Kauffman, S. A. (2011). 1138: 304:gene regulatory networks 234:Kauffman graduated from 91:gene regulatory networks 3452:Engineering cybernetics 3382:Artificial intelligence 3215:, by Stuart Kauffman". 1670:10.1073/pnas.0711525105 1241:At Home in the Universe 1133:Royal Society of Canada 370:Harvard Divinity School 320:combinatorial chemistry 3856:Theoretical biologists 3826:American biophysicists 3775:Walter Bradford Cannon 3665:Ludwig von Bertalanffy 3520:Alfred Radcliffe-Brown 3467:Management cybernetics 3392:Biomedical cybernetics 3387:Biological cybernetics 3322:"The Shape of History" 3196:. Vol. 1. Wiley. 3110:10.1002/anie.200702552 2708:[book review]" 2664:Sansom, Roger (2011). 2082:A World Beyond Physics 1715:10.1186/1752-0509-3-20 1649:Proc Natl Acad Sci USA 1332:Journal of Cybernetics 1257:A World Beyond Physics 1249:Reinventing the Sacred 1115:Recognition and awards 1105: 995: 932:mean of approximately 925: 882: 801: 774: 739: 632: 609: 542: 515: 474: 444: 252:developmental genetics 3735:Anthony Stafford Beer 3570:Ernst von Glasersfeld 2456:academicimpact.un.org 2405:Kauffman et al. 2014b 2332:on September 23, 2010 1177:biochemical reactions 1106: 996: 926: 883: 802: 800:{\displaystyle S_{i}} 775: 740: 633: 610: 543: 541:{\displaystyle S_{i}} 516: 475: 442: 400:University of Vermont 366:University of Calgary 362:University of Calgary 308:developmental biology 256:University of Chicago 176:University of Calgary 168:University of Chicago 152:theoretical biologist 136:University of Calgary 128:University of Chicago 3765:Valentin Braitenberg 3645:Jay Wright Forrester 3098:Angew. Chem. Int. Ed 1237:The Origins of Order 1153:evolutionary biology 1129:Accademia dei Lincei 1121:MacArthur Fellowship 1005: 936: 903: 814: 784: 752: 645: 622: 555: 525: 505: 464: 425:University of Oxford 316:evolutionary biology 290:in various areas of 188:MacArthur Fellowship 148:Stuart Alan Kauffman 3790:William Grey Walter 3730:Sergei P. Kurdyumov 3690:N. Katherine Hayles 3472:Medical cybernetics 3432:Conversation theory 3235:Scientific American 3163:2002Cmplx...7e..31R 2962:. August 16, 2016. 2914:2017PLoSO..1279303M 2855:2014NatSR...4E5890T 2625:10.2307/j.ctvzxx9tx 2572:1993BpJ....65.2698F 2525:1991PhRvA..44.6399W 1930:2015JPhCS.626a2023V 1787:10.3390/life1010034 1778:2011Life....1...34K 1702:BMC Systems Biology 1661:2008PNAS..105.1897N 1586:2007PhRvE..76c6110H 1524:Dembski, William A. 1462:1991JThBi.149..467K 1411:1991SciAm.265b..78K 1398:Scientific American 1365:1971JThBi..31..429K 1307:1969JThBi..22..437K 1161:molecular evolution 1157:population dynamics 874: 850: 769: 727: 703: 333:, Kauffman started 324:molecular evolution 3770:William Ross Ashby 3695:Natalia Bekhtereva 3670:Maleyka Abbaszadeh 3610:Heinz von Foerster 3535:Buckminster Fuller 3462:Information theory 3412:Catastrophe theory 3171:10.1002/cplx.10037 2832:Scientific Reports 2439:Vattay et al. 2015 2148:Nykter et al. 2008 1501:Davies, Paul C. W. 1151:in three areas of 1101: 991: 921: 878: 860: 836: 797: 770: 755: 735: 713: 689: 628: 605: 582: 538: 511: 484:value (called the 470: 445: 435:Fitness landscapes 312:fitness landscapes 296:autocatalytic sets 280:Santa Fe Institute 216:autocatalytic sets 178:. He is currently 53:September 28, 1939 3876:Marshall Scholars 3851:MacArthur Fellows 3821:American atheists 3798: 3797: 3720:Ranulph Glanville 3635:Jakob von UexkĂŒll 3615:Humberto Maturana 3575:Francis Heylighen 3203:978-3-527-41104-7 3137:978-0-470-74640-0 3104:(33): 6128–6136. 3063:978-1-78634-641-4 2863:10.1038/srep05890 2765:Felin et al. 2014 2720:(12): 1084–1085. 2519:(10): 6399–6413. 2513:Physical Review A 2381:"Stuart Kauffman" 2208:Dadon et al. 2012 2091:978-0-19-087133-8 2072:978-0-19-939045-8 2053:978-0-465-00300-6 1988:978-0-19-507951-7 1752:978-0-387-75888-6 1573:Physical Review E 1557:. Edge Foundation 1276:Selected articles 1230:adjacent possible 1212:quantum coherence 1208:mind-body problem 1149:natural selection 1145:self-organization 1099: 989: 988: 631:{\displaystyle K} 573: 514:{\displaystyle S} 473:{\displaystyle N} 449:Fitness landscape 381:stochastic models 294:. These included 240:Oxford University 203:natural selection 199:self-organization 145: 144: 118:Scientific career 69:Oxford University 65:Dartmouth College 3883: 3785:Warren McCulloch 3760:Valentin Turchin 3710:Pyotr Grigorenko 3655:John N. Warfield 3580:Francisco Varela 3540:Charles François 3510:Alexander Lerner 3487:Sociocybernetics 3407:Neurocybernetics 3360: 3353: 3346: 3337: 3336: 3331: 3308: 3287: 3285: 3283: 3265: 3246: 3244: 3242: 3224: 3207: 3181: 3179: 3177: 3141: 3121: 3084: 3083: 3047: 3031: 3025: 3024: 2999: 2997: 2995: 2990:. 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Index


Dartmouth College
Oxford University
University of California, San Francisco
NK model
origin of life
gene regulatory networks
Wiener Medal
Marshall Scholar
MacArthur Fellow
University of Chicago
University of Pennsylvania
University of Calgary
theoretical biologist
complex systems
origin of life
Earth
University of Chicago
University of Pennsylvania
University of Calgary
emeritus
Institute for Systems Biology
MacArthur Fellowship
Wiener Medal
self-organization
natural selection
Boolean networks
autocatalytic sets
polymers
peptides

Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.

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