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In addition to the pathway diagram, each pathway page also includes a description, bibliography, pathway version history and list of component genes and proteins with linkouts to public resources. For individual pathway nodes, users can access a list of other pathways with that node. Pathway changes
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Agrawal, Ayushi; Balcı, Hasan; Hanspers, Kristina; Coort, Susan L; Martens, Marvin; Slenter, Denise N; Ehrhart, Friederike; Digles, Daniela; Waagmeester, Andra; Wassink, Isabel; Abbassi-Daloii, Tooba; Lopes, Elisson N; Iyer, Aishwarya; Acosta, Javier Millán; Willighagen, Lars G; Nishida, Kozo;
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Slenter, Denise N.; Kutmon, Martina; Hanspers, Kristina; Riutta, Anders; Windsor, Jacob; Nunes, Nuno; MĂ©lius, Jonathan; Cirillo, Elisa; Coort, Susan L.; Digles, Daniela; Ehrhart, Friederike; Giesbertz, Pieter; Kalafati, Marianthi; Martens, Marvin; Miller, Ryan; Nishida, Kozo; Rieswijk, Linda;
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species. Using a search feature, one can locate a particular pathway by name, by the genes and proteins it contains, or by the text displayed in its description. The pathway collection can also be browsed with combinations of species names and ontology-based categories.
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can be monitored by displaying previous revisions or by viewing differences between specific revisions. Using the pathway history one can also revert to a previous revision of a pathway. Pathways can also be tagged with ontology terms from three major
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systems. WikiPathways was founded in 2008 by Thomas Kelder, Alex Pico, Martijn Van Iersel, Kristina
Hanspers, Bruce Conklin and Chris Evelo. Current architects are Alex Pico and Martina Summer-Kutmon.
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Bohler, Anwesha; Wu, Guanming; Kutmon, Martina; Pradhana, Leontius Adhika; Coort, Susan L.; Hanspers, Kristina; Haw, Robin; Pico, Alexander R.; Evelo, Chris T. (20 May 2016).
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WikiPathways content is used to annotate and cross-link
Knowledge articles covering various genes, proteins, metabolites and pathways. Here are a few examples:
165:. Any registered WikiPathways user can contribute, and anybody can become a registered user. Contributions are monitored by a group of admins, but the bulk of
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Martijn P van Iersel; Alexander R. Pico; Thomas Kelder; Jianjiong Gao; Isaac Ho; Kristina
Hanspers; Bruce R Conklin; Chris T. Evelo (4 January 2010).
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Waagmeester, Andra; Kutmon, Martina; Riutta, Anders; Miller, Ryan; Willighagen, Egon L.; Evelo, Chris T.; Pico, Alexander R. (23 June 2016).
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309:, and RDF), WikiPathways supports a variety of ways to integrate and interact with pathway content. These include directed link-outs,
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The pathway content at WikiPathways is freely available for download in several data and image formats. WikiPathways is completely
906:"WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks"
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Martijn P van Iersel; Thomas Kelder; Alexander R Pico; Kristina
Hanspers; Susan Coort; Bruce R Conklin; Chris Evelo (2008).
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Riutta, Anders; Basaric, Helena; Evelo, Chris T; Willighagen, Egon L; Kutmon, Martina; Pico, Alexander R (6 November 2023).
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Kelder, T.; Pico, A. R.; Hanspers, K.; Van Iersel, M. P.; Evelo, C.; Conklin, B. R.; Hide, W. (2009). Hide, Winston (ed.).
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Each article at WikiPathways is dedicated to a particular pathway. Many types of molecular pathways are covered, including
169:, editorial curation, and maintenance is the responsibility of the user community. WikiPathways is originally built using
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Alexander R Pico; Thomas Kelder; Martijn P van Iersel; Kristina
Hanspers; Bruce R Conklin; Chris Evelo (22 July 2008).
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Waagmeester, Andra; Eijssen, Lars M.T.; Evelo, Chris T.; Pico, Alexander R.; Willighagen, Egon L. (10 November 2017).
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Hanumappa, Mamatha; Preece, Justin; Elser, Justin; Nemeth, Denise; Bono, Gina; Wu, Kenny; Jaiswal, Pankaj (2013).
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Commons Attribution-ShareAlike 3.0 Unported License
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