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Soil microbiology

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265:. Fungi can be split into species based primarily on the size, shape and color of their reproductive spores, which are used to reproduce. Most of the environmental factors that influence the growth and distribution of bacteria and actinomycetes also influence fungi. The quality as well as quantity of organic matter in the soil has a direct correlation to the growth of fungi, because most fungi consume organic matter for nutrition. Compared with bacteria, fungi are relatively benefitted by acidic soils. Fungi also grow well in dry, arid soils because fungi are aerobic, or dependent on oxygen, and the higher the moisture content in the soil, the less oxygen is present for them. 1548: 280:. Photosynthesis converts light energy to chemical energy that can be stored as nutrients. For algae to grow, they must be exposed to light because photosynthesis requires light, so algae are typically distributed evenly wherever sunlight and moderate moisture is available. Algae do not have to be directly exposed to the Sun, but can live below the soil surface given uniform temperature and moisture conditions. Algae are also capable of performing nitrogen fixation. 3442: 3077: 2115: 3431: 3458: 2253: 304:, which is the molecule that absorbs sunlight and uses that energy to make carbohydrates from carbon dioxide and water and also pigments that make it blue-green to violet in color. The Chlorophyceae usually only have chlorophyll in them which makes them green, and the bacillariophyceae contain chlorophyll as well as pigments that make the algae brown in color. 391:
herbivorous insects and microbes that kill host cells to extract nutrients. The challenge of modulating a community of diverse microbes in plant roots is more involved than that of clearing a few pathogens from inside a plant leaf. Consequently, regulating root microbiome composition may require immune mechanisms other than those that control foliar microbes.
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Flagellates are the smallest members of the protozoa group, and can be divided further based on whether they can participate in photosynthesis. Nonchlorophyll-containing flagellates are not capable of photosynthesis because chlorophyll is the green pigment that absorbs sunlight. These flagellates are
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such as fertilizer and pesticide without compensating for their effects. By contrast, healthy soil can increase fertility in multiple ways, including supplying nutrients such as nitrogen and protecting against pests and disease, while reducing the need for water and other inputs. Some approaches may
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Blue-green algae, or Cyanophyceae, are responsible for nitrogen fixation. The amount of nitrogen they fix depends more on physiological and environmental factors rather than the organism's abilities. These factors include intensity of sunlight, concentration of inorganic and organic nitrogen sources
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are key regulators of innate immunity in plant leaves. Mutants impaired in salicylic acid synthesis and signaling are hypersusceptible to microbes that colonize the host plant to obtain nutrients, whereas mutants impaired in jasmonic acid and ethylene synthesis and signaling are hypersusceptible to
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Some bacteria can colonize minerals in the soil and help influence weathering and the breaking down of these minerals. The overall composition of the soil can determine the amount of bacteria growing in the soil. The more minerals that are found in area can result in a higher abundance of bacteria.
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mutants impaired in synthesis or signaling of individual or combinations of plant hormones, the microbial community in the soil adjacent to the root and in bacteria living within root tissue. Changes in salicylic acid signaling stimulated a reproducible shift in the relative abundance of bacterial
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are only a few examples of these antibiotics. Streptomycin is used to treat tuberculosis and infections caused by certain bacteria and neomycin is used to reduce the risk of bacterial infection during surgery. Erythromycin is used to treat certain infections caused by bacteria, such as bronchitis,
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species, rather than feeding on plants or other organisms. These bacteria are responsible for nitrogen fixation. The amount of autotrophic bacteria is small compared to heterotrophic bacteria (the opposite of autotrophic bacteria, heterotrophic bacteria acquire energy by consuming plants or other
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The crops that had received the most organic fertilizer had reached nearly twice the height of those in zone A and were inches taller than zone C. The yield of that section equaled that of irrigated crops, whereas the yield of the conventional technique was negligible. The mycorrhiza had
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During plant domestication, humans selected for traits related to plant improvement, but not for plant associations with a beneficial microbiome. Even minor changes in abundance of certain bacteria can have a major effect on plant defenses and physiology, with only minimal effects on overall
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found mostly in soil. Flagellates that contain chlorophyll typically occur in aquatic conditions. Flagellates can be distinguished by their flagella, which is their means of movement. Some have several flagella, while other species only have one that resembles a long branch or appendage.
358:. A pseudopodium or "false foot" is a temporary obtrusion from the body of the amoeba that helps pull it along surfaces for movement or helps to pull in food. The amoeba does not have permanent appendages and the pseudopodium is more of a slime-like consistency than a flagellum. 576:
have begun investing in the technology. In 2012, Bayer bought AgraQuest for $ 425 million. Its €10 million annual research budget funds field-tests of dozens of new fungi and bacteria to replace chemical pesticides or to serve as biostimulants to promote crop health and growth.
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Ciliates are the largest of the protozoa group, and move by means of short, numerous cilia that produce beating movements. Cilia resemble small, short hairs. They can move in different directions to move the organism, giving it more mobility than flagellates or amoebae.
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are eukaryotic organisms that were some of the first microorganisms to reproduce sexually, a significant evolutionary step from duplication of spores, like those that many other soil microorganisms depend on. Protozoa can be split up into three categories:
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In both the US and Europe, companies have to provide regulatory authorities with evidence that both the individual strains and the product as a whole are safe, leading many existing products to label themselves "biostimulants" instead of
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Fungi are abundant in soil, but bacteria are more abundant. Fungi are important in the soil as food sources for other, larger organisms, pathogens, beneficial symbiotic relationships with plants or other organisms and
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or root fungi form a dense network of thin filaments that reach far into the soil, acting as extensions of the plant roots they live on or in. These fungi facilitate the uptake of water and a wide range of nutrients.
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Many strains that seemed promising in the lab often failed to prove effective in the field, because of soil, climate and ecosystem effects, leading companies to skip the lab phase and emphasize field tests.
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to boost microbial diversity. They split an unirrigated 100-hectare field into three zones, one treated with chemical fertilizer and pesticides; and the other two with different amounts of an organic
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properties and promotes plant growth. It can be applied in a liquid form on plants and to soil to fight a range of pathogens. It has found acceptance in both conventional and organic agriculture.
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are soil microorganisms. They are a type of bacteria, but they share some characteristics with fungi that are most likely a result of convergent evolution due to a common habitat and lifestyle.
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Classical plant defense hormones also function in plant growth, metabolism and abiotic stress responses, obscuring the precise mechanism by which salicylic acid regulates this microbiome.
998:"Differential response of soil microbial and animal communities along the chronosequence of Cunninghamia lanceolata at different soil depth levels in subtropical forest ecosystem" 539:, producing some $ 1 billion annually, less than 1% of the chemical amendment market, estimated at $ 110 billion. Some microbes have been marketed for decades, such as 212:
Although they are members of the Bacteria kingdom, many actinomycetes share characteristics with fungi, including shape and branching properties, spore formation and secondary
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Sylvia, David M., Jeffry J. Fuhrmann, Peter G. Hartel, and David A. Zuberer. Principles and Applications of Soil Microbiology. Upper Saddle River: Prentice Hall, 1998. Print.
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Rosskopf, Erin; Di Gioia, Francesco; Hong, Jason C.; Pisani, Cristina; Kokalis-Burelle, Nancy (2020-08-25). "Organic Amendments for Pathogen and Nematode Control".
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Fertilizers deplete soil of organic matter and trace elements, cause salination and suppress mycorrhizae; they can also turn symbiotic bacteria into competitors.
443:. Their biochemical activity is a factor in both stabilization and degradation of soil structure. Enzyme activity is higher in plots that are fertilized with 1756: 614:, where temperatures reach 60 °C (140 °F). Introduced in the US market in 2014 for corn and rice, they trigger an adaptive stress response. 354:
Amoebae are larger than flagellates and move in a different way. Amoebae can be distinguished from other protozoa by their slug-like properties and
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density, but levels decrease because the bacteria lacks a defensible niche. One way to compensate is to use multiple collaborating strains.
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Islam, Waqar; Saqib, Hafiz Sohaib Ahmad; Adnan, Muhammad; Wang, Zhenyu; Tayyab, Muhammad; Huang, Zhiqun; Chen, Han Y.H. (2021-08-11).
41:, their functions, and how they affect soil properties. It is believed that between two and four billion years ago, the first ancient 2095: 2085: 1186:
Falkowski, Paul G.; Fenchel, Tom; Delong, Edward F. (2008-05-23). "The Microbial Engines That Drive Earth's Biogeochemical Cycles".
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and trigger or dampen stress responses. In general a more diverse soil microbiome results in fewer plant diseases and higher yield.
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Their growth in liquid culture occurs as distinct clumps or pellets, rather than as a uniform turbid suspension as in bacteria.
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and other crop diseases, has caused famines throughout history. Other fungi and bacteria cause the decay of roots and leaves.
785:"Sugarcane monoculture drives microbial community composition, activity and abundance of agricultural-related microorganisms" 188:) that can be used by plants. Autotrophic bacteria derive their energy by making their own food through oxidation, like the 3265: 1892: 702:, consisting of fermented grape leftovers and a variety of bacteria and fungi, along with four types of mycorrhiza spores. 3292: 2494: 114:. They are the most abundant microorganisms in the soil, and serve many important purposes, including nitrogen fixation. 2772: 2304: 2080: 838:
Farquhar, James; Bao, Huiming; Thiemens, Mark (2000-08-04). "Atmospheric Influence of Earth's Earliest Sulfur Cycle".
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is an example of bacterial versatility because it, unlike most species, can grow in the absence of oxygen, respiring
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penetrated the rock by excreting acids, allowing plant roots to reach almost 2 meters into the rocky soil and reach
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microorganisms), but are very important because almost every plant and organism requires nitrogen in some way.
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One of the most distinguished features of bacteria is their biochemical versatility. A bacterial genus called
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Nitrogen is often the most limiting nutrient in soil and water. Bacteria are responsible for the process of
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The composition of the rhizobiome can change rapidly in response to changes in the surrounding environment.
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Up to 10 billion bacterial cells inhabit each gram of soil in and around plant roots, a region known as the
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A 2007 study showed that a complex symbiosis with fungi and viruses makes it possible for a grass called
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One of the most notable characteristics of the actinomycetes is their ability to produce antibiotics.
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Tayyab, Muhammad; Yang, Ziqi; Zhang, Caifang; Islam, Waqar; Lin, Wenxiong; Zhang, Hua (2021-09-01).
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A pilot project in Europe used a plow to slightly loosen and ridge the soil. They planted oats and
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pertussis (whooping cough), pneumonia and ear, intestine, lung, urinary tract and skin infections.
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When selecting a bacterium for disease control its other effects must also be considered. Some
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Populations of beneficial microbes can diminish over time. Serenade stimulates a high initial
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can metabolize a wide range of chemicals and fertilizers. In contrast, another genus known as
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These bacteria will also form aggregates which increases the overall health of the soil.
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are able to respire both aerobically and anaerobically, using nitrate as the terminal
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Haney, Cara H.; Ausubel, Frederick M. (2015-08-21). "Plant microbiome blueprints".
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Rao, Subba. Soil Microbiology. Fourth ed. Enfield: Science Publishers, 1999. Print.
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Up to 30% of the carbon fixed by plants is excreted from the roots as so-called
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phyla in the endophytic compartment. These changes were consistent across many
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fungi that suppress other, pathogenic fungi, and the caterpillar killer
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above), making nitrogen unavailable. Stevens et al 1998 find bacterial
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Farming can destroy soil's rhiziobiome (microbial ecosystem) by using
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Jelen, Benjamin I.; Giovannelli, Donato; Falkowski, Paul G. (2016).
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Wood, Martin. Soil Biology. New York: Chapman and Hall, 1989. Print
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even allow agriculture in soils that were never considered viable.
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and fix nitrogen from the air into a biologically useful form.
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as compared to inorganic fertilizers. The microflora of the
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The mycelium branches in a manner similar to that of fungi
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Vrieze, Jop de (2015-08-14). "The littlest farmhands".
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and minerals in the soil available to plants, produce
782: 1390: 995: 837: 49:came about on Earth's oceans. These bacteria could 288:Algae can be split up into three main groups: the 1261: 1259: 1257: 1255: 1253: 1251: 3474: 1131: 1129: 982: 980: 978: 976: 3240:Australian Society of Soil Science Incorporated 629:perform the opposite of nitrogen fixation (see 3276:National Society of Consulting Soil Scientists 1381: 1275:Msimbira, Levini A.; Smith, Donald L. (2020). 1248: 146:, which is also known as oxidation. The genus 2488: 2145: 1466: 1274: 1126: 973: 223:They form aerial mycelium as well as conidia. 1322: 789:Environmental Science and Pollution Research 106:, the smallest organisms in soil apart from 639:dissimilatory nitrate reduction to ammonium 3457: 2495: 2481: 2152: 2138: 1473: 1459: 2096:Physical factors affecting microbial life 2086:Microbially induced sedimentary structure 1292: 1207: 1162: 1031: 1013: 956: 913: 370: 3250:Central Soil Salinity Research Institute 1138: 888: 653:A funguslike unicellular organism named 552:Serenade is a biopesticide containing a 451:may increase activity of enzymes there. 207: 121: 3356:Soil Science Society of America Journal 2502: 1872:International Census of Marine Microbes 1847:Hydrothermal vent microbial communities 1382:Glinski, J.; Horabik, J., eds. (2011). 713: 422: 313:and ambient temperature and stability. 14: 3475: 3328:Journal of Soil and Water Conservation 2789:Canadian system of soil classification 1144: 1081: 630: 524: 472:that spur growth, stimulate the plant 308:Blue-green algae and nitrogen fixation 138:can only derive its energy by turning 2476: 2133: 1454: 1318: 1316: 1314: 1312: 1281:Frontiers in Sustainable Food Systems 1077: 1075: 1073: 1071: 648: 276:can make their own nutrients through 3430: 3266:International Union of Soil Sciences 1893:Microbiomes of the built environment 1069: 1067: 1065: 1063: 1061: 1059: 1057: 1055: 1053: 1051: 175: 3293:Soil and Water Conservation Society 1417:10.1146/annurev-phyto-080516-035608 958:10.1146/annurev-micro-102215-095521 720:Nikolai Aleksandrovich Krasil'nikov 535:Almost all registered microbes are 24: 2773:Unified Soil Classification System 2305:Soil retrogression and degradation 2081:Lines on the Antiquity of Microbes 1480: 1309: 25: 3499: 2778:AASHTO Soil Classification System 1048: 610:to thrive in geothermal soils in 394:A 2015 study analyzed a panel of 3456: 3441: 3440: 3429: 3321:Acta Agriculturae Scandinavica B 3261:Indian Institute of Soil Science 3245:Canadian Society of Soil Science 3076: 3075: 2251: 2159: 2114: 2113: 1908:Microbial symbiosis and immunity 1546: 685: 196: 3299:Soil Science Society of America 1400:Annual Review of Phytopathology 1375: 1268: 1179: 454: 27:Study of microorganisms in soil 3304:World Congress of Soil Science 3288:Soil Science Society of Poland 2794:Australian Soil Classification 2785:(French classification system) 989: 932: 918:. Princeton University Press. 907: 893:. Princeton University Press. 882: 831: 776: 459: 340: 230: 13: 1: 2315:Soil compaction (agriculture) 1992:Synthetic microbial consortia 1857:Microbial oxidation of sulfur 1757:Host microbe interactions in 945:Annual Review of Microbiology 769: 487:The group of bacteria called 1590:Microbial population biology 1104:10.1126/science.349.6249.680 1002:Journal of Advanced Research 860:10.1126/science.289.5480.756 641:to especially occur at high 7: 3256:German Soil Science Society 2814:List of vineyard soil types 1386:. Springer. pp. 63–65. 1384:Encyclopedia of Agrophysics 732: 361: 316: 300:. The Cyanophyceae contain 94: 10: 3504: 3435:Knowledge:WikiProject Soil 3271:International Year of Soil 2799:Polish Soil Classification 2238:Environmental soil science 1852:Marine microbial symbiosis 1678:Kill the Winner hypothesis 1650:Bacteria collective motion 1151:Environmental Microbiology 1015:10.1016/j.jare.2021.08.005 801:10.1007/s11356-021-14033-y 528: 349: 3425: 3365: 3312: 3232: 3159: 3093: 3073: 2823:Non-systematic soil types 2822: 2759: 2686: 2510: 2465: 2260: 2249: 2243:Agricultural soil science 2185: 2167: 2109: 2046: 2000: 1888:Microbes in human culture 1880: 1804: 1768: 1658: 1608: 1555: 1544: 1488: 889:Canfield, Donald (2014). 612:Yellowstone National Park 607:Dichanthelium lanuginosum 595:that contains the fungus 491:live inside the roots of 3393:Infiltration (hydrology) 3187:Geotechnical engineering 2809:List of U.S. state soils 1982:Human Microbiome Project 1693:Microbial biodegradation 1294:10.3389/fsufs.2020.00106 914:Falkowski, Paul (2015). 749:Effective microorganisms 631:§ Nitrogen fixation 283: 268: 255: 3462:List of soil scientists 2804:1938 USDA soil taxonomy 2783:Référentiel pédologique 2767:FAO soil classification 2033:Microbiological culture 2028:Microbial DNA barcoding 1837:Antarctic microorganism 1585:Microbial phylogenetics 1345:10.1126/science.aad0092 1218:10.1126/science.1153213 1164:10.1111/1462-2920.14751 670: 517:, aliphatic acids, and 3233:Societies, Initiatives 2455:Soil water (retention) 2018:Impedance microbiology 1759:Caenorhabditis elegans 1575:Microbial intelligence 1565:Microbial biogeography 744:Korean natural farming 656:Phytophthora infestans 598:Metarhizium anisopliae 548:Bacillus thuringiensis 419:microbiome structure. 371:Composition regulation 163:Pseudomonas aeruginosa 3452:Category soil science 3136:Soil salinity control 2064:Microbial dark matter 2008:Dark-field microscopy 1812:Marine microorganisms 1688:Microbial cooperation 529:Further information: 208:Similarities to fungi 156:. Several species of 122:Biochemical processes 3217:Agricultural science 3111:Soil guideline value 2935:Calcareous grassland 2512:World Reference Base 1683:Microbial consortium 1580:Microbial metabolism 728:(born 1941), British 722:(1896–1973), Russian 714:Soil microbiologists 627:suppressive bacteria 423:Biochemical activity 408:within the affected 3313:Scientific journals 2504:Soil classification 2445:Soil organic matter 2406:Pore water pressure 1786:Seagrass microbiome 1337:2015Sci...349..788H 1200:2008Sci...320.1034F 1194:(5879): 1034–1039. 1096:2015Sci...349..680D 852:2000Sci...289..756F 795:(35): 48080–48096. 588:Penicillium bilaiae 531:Microbial inoculant 525:Commercial activity 509:—including sugars, 3408:Impervious surface 2688:USDA soil taxonomy 2514:for Soil Resources 2401:Pore space in soil 2344:Soil acidification 2300:Soil contamination 2023:Microbial cytology 1987:Protein production 1822:Marine prokaryotes 1708:Microbial food web 1638:Protist locomotion 1616:Bacterial motility 1570:Microbial genetics 726:Michael Goodfellow 659:, responsible for 649:Unhelpful microbes 572:companies such as 464:Microbes can make 3470: 3469: 3101:Soil conservation 3087: 3086: 2361:Soil biodiversity 2208:Soil microbiology 2127: 2126: 1898:Food microbiology 1791:Soil microbiology 1730:Microbial synergy 1698:Microbial ecology 1331:(6250): 788–789. 1090:(6249): 680–683. 846:(5480): 756–758. 555:Bacillus subtilis 298:bacillariophyceae 182:nitrogen fixation 176:Nitrogen fixation 168:electron acceptor 31:Soil microbiology 16:(Redirected from 3495: 3460: 3459: 3444: 3443: 3433: 3432: 3282:OPAL Soil Centre 3079: 3078: 2975:Hydrophobic soil 2497: 2490: 2483: 2474: 2473: 2438:Soil respiration 2255: 2154: 2147: 2140: 2131: 2130: 2117: 2116: 1918:Human microbiome 1842:Coral microbiome 1776:Plant microbiome 1550: 1475: 1468: 1461: 1452: 1451: 1445: 1444: 1394: 1388: 1387: 1379: 1373: 1372: 1320: 1307: 1306: 1296: 1272: 1266: 1263: 1246: 1245: 1211: 1183: 1177: 1176: 1166: 1142: 1136: 1133: 1124: 1123: 1079: 1046: 1045: 1035: 1017: 993: 987: 984: 971: 970: 960: 936: 930: 929: 911: 905: 904: 886: 880: 879: 835: 829: 828: 780: 677:B. subtilis 558:strain that has 431:are produced by 33:is the study of 21: 3503: 3502: 3498: 3497: 3496: 3494: 3493: 3492: 3473: 3472: 3471: 3466: 3421: 3403:Crust (geology) 3383:Land management 3378:Land conversion 3361: 3308: 3228: 3207:Earth materials 3155: 3141:Erosion control 3126:Soil governance 3106:Soil management 3089: 3088: 3083: 3069: 3040:Subaqueous soil 3025:Serpentine soil 2885:Parent material 2818: 2755: 2682: 2513: 2506: 2501: 2461: 2381:Soil resilience 2310:Soil compaction 2278:Soil morphology 2256: 2247: 2181: 2163: 2158: 2128: 2123: 2105: 2042: 1996: 1876: 1827:Marine protists 1800: 1781:Root microbiome 1764: 1673:Biological pump 1654: 1604: 1551: 1542: 1484: 1479: 1449: 1448: 1395: 1391: 1380: 1376: 1321: 1310: 1273: 1269: 1264: 1249: 1209:10.1.1.474.2161 1184: 1180: 1145:Vieira (2020). 1143: 1139: 1134: 1127: 1080: 1049: 994: 990: 985: 974: 937: 933: 926: 912: 908: 901: 887: 883: 836: 832: 781: 777: 772: 739:Natural farming 735: 716: 688: 673: 651: 635:denitrification 533: 527: 481:soil amendments 462: 457: 425: 373: 364: 352: 343: 319: 310: 286: 271: 258: 233: 210: 199: 178: 124: 97: 28: 23: 22: 15: 12: 11: 5: 3501: 3491: 3490: 3485: 3468: 3467: 3465: 3464: 3454: 3448: 3437: 3426: 3423: 3422: 3420: 3419: 3414: 3412:Surface runoff 3405: 3400: 3395: 3390: 3385: 3380: 3375: 3369: 3367: 3363: 3362: 3360: 3359: 3352: 3345: 3338: 3335:Plant and Soil 3331: 3324: 3316: 3314: 3310: 3309: 3307: 3306: 3301: 3296: 3290: 3285: 3279: 3273: 3268: 3263: 3258: 3253: 3247: 3242: 3236: 3234: 3230: 3229: 3227: 3226: 3225: 3224: 3214: 3209: 3204: 3199: 3194: 3189: 3184: 3179: 3174: 3169: 3163: 3161: 3160:Related fields 3157: 3156: 3154: 3153: 3148: 3143: 3138: 3133: 3128: 3123: 3118: 3113: 3108: 3103: 3097: 3095: 3091: 3090: 3085: 3084: 3074: 3071: 3070: 3068: 3067: 3062: 3057: 3052: 3047: 3042: 3037: 3032: 3027: 3022: 3017: 3015:Prime farmland 3012: 3007: 3002: 2997: 2992: 2987: 2982: 2977: 2972: 2970:Fuller's earth 2967: 2962: 2960:Expansive clay 2957: 2952: 2947: 2942: 2937: 2932: 2927: 2922: 2917: 2912: 2907: 2902: 2897: 2892: 2887: 2882: 2877: 2872: 2867: 2862: 2857: 2852: 2847: 2842: 2837: 2832: 2826: 2824: 2820: 2819: 2817: 2816: 2811: 2806: 2801: 2796: 2791: 2786: 2780: 2775: 2770: 2763: 2761: 2757: 2756: 2754: 2753: 2748: 2743: 2738: 2733: 2728: 2723: 2718: 2713: 2708: 2703: 2698: 2692: 2690: 2684: 2683: 2681: 2680: 2675: 2670: 2665: 2660: 2655: 2650: 2645: 2640: 2635: 2630: 2625: 2620: 2615: 2610: 2605: 2600: 2595: 2590: 2585: 2580: 2575: 2570: 2565: 2560: 2555: 2550: 2545: 2540: 2535: 2530: 2525: 2519: 2517: 2508: 2507: 2500: 2499: 2492: 2485: 2477: 2471: 2469: 2463: 2462: 2460: 2459: 2458: 2457: 2447: 2442: 2441: 2440: 2430: 2425: 2423:Soil biomantle 2420: 2415: 2410: 2409: 2408: 2403: 2396:Soil structure 2393: 2388: 2383: 2378: 2376:Soil fertility 2373: 2368: 2363: 2358: 2353: 2348: 2347: 2346: 2336: 2335: 2334: 2324: 2319: 2318: 2317: 2307: 2302: 2297: 2292: 2291: 2290: 2288:Soil formation 2285: 2280: 2270: 2264: 2262: 2258: 2257: 2250: 2248: 2246: 2245: 2240: 2235: 2233:Soil chemistry 2230: 2228:Soil mechanics 2225: 2220: 2215: 2210: 2205: 2200: 2195: 2189: 2187: 2183: 2182: 2180: 2179: 2174: 2168: 2165: 2164: 2157: 2156: 2149: 2142: 2134: 2125: 2124: 2122: 2121: 2110: 2107: 2106: 2104: 2103: 2098: 2093: 2088: 2083: 2078: 2077: 2076: 2066: 2061: 2059:Deep biosphere 2056: 2054:Bioremediation 2050: 2048: 2044: 2043: 2041: 2040: 2035: 2030: 2025: 2020: 2015: 2013:DNA sequencing 2010: 2004: 2002: 1998: 1997: 1995: 1994: 1989: 1984: 1979: 1978: 1977: 1972: 1967: 1966: 1965: 1955: 1950: 1945: 1940: 1935: 1930: 1925: 1915: 1910: 1905: 1900: 1895: 1890: 1884: 1882: 1878: 1877: 1875: 1874: 1869: 1864: 1859: 1854: 1849: 1844: 1839: 1834: 1829: 1824: 1819: 1817:Marine viruses 1814: 1808: 1806: 1802: 1801: 1799: 1798: 1793: 1788: 1783: 1778: 1772: 1770: 1766: 1765: 1763: 1762: 1754: 1752:Quorum sensing 1749: 1748: 1747: 1742: 1732: 1727: 1722: 1721: 1720: 1715: 1713:microbial loop 1705: 1703:Microbial cyst 1700: 1695: 1690: 1685: 1680: 1675: 1670: 1664: 1662: 1656: 1655: 1653: 1652: 1647: 1646: 1645: 1635: 1634: 1633: 1628: 1623: 1621:run-and-tumble 1612: 1610: 1606: 1605: 1603: 1602: 1597: 1592: 1587: 1582: 1577: 1572: 1567: 1561: 1559: 1553: 1552: 1545: 1543: 1541: 1540: 1535: 1530: 1525: 1520: 1515: 1510: 1505: 1500: 1494: 1492: 1486: 1485: 1482:Microorganisms 1478: 1477: 1470: 1463: 1455: 1447: 1446: 1409:Annual Reviews 1389: 1374: 1308: 1267: 1247: 1178: 1157:(3): 917–933. 1137: 1125: 1047: 988: 972: 931: 924: 916:Life's Engines 906: 899: 881: 830: 774: 773: 771: 768: 767: 766: 761: 759:Soil biomantle 756: 751: 746: 741: 734: 731: 730: 729: 723: 715: 712: 687: 684: 672: 669: 650: 647: 593:bioinsecticide 526: 523: 461: 458: 456: 453: 424: 421: 380:salicylic acid 376:Plant hormones 372: 369: 363: 360: 351: 348: 342: 339: 318: 315: 309: 306: 285: 282: 278:photosynthesis 270: 267: 257: 254: 232: 229: 228: 227: 224: 221: 209: 206: 198: 195: 177: 174: 123: 120: 96: 93: 47:microorganisms 35:microorganisms 26: 9: 6: 4: 3: 2: 3500: 3489: 3486: 3484: 3481: 3480: 3478: 3463: 3455: 3453: 3449: 3447: 3446:Category soil 3438: 3436: 3428: 3427: 3424: 3418: 3415: 3413: 3409: 3406: 3404: 3401: 3399: 3396: 3394: 3391: 3389: 3386: 3384: 3381: 3379: 3376: 3374: 3371: 3370: 3368: 3364: 3358: 3357: 3353: 3351: 3350: 3349:Soil Research 3346: 3344: 3343: 3342:Pochvovedenie 3339: 3337: 3336: 3332: 3330: 3329: 3325: 3323: 3322: 3318: 3317: 3315: 3311: 3305: 3302: 3300: 3297: 3294: 3291: 3289: 3286: 3283: 3280: 3277: 3274: 3272: 3269: 3267: 3264: 3262: 3259: 3257: 3254: 3251: 3248: 3246: 3243: 3241: 3238: 3237: 3235: 3231: 3223: 3220: 3219: 3218: 3215: 3213: 3210: 3208: 3205: 3203: 3200: 3198: 3195: 3193: 3190: 3188: 3185: 3183: 3182:Geomorphology 3180: 3178: 3175: 3173: 3170: 3168: 3165: 3164: 3162: 3158: 3152: 3151:Liming (soil) 3149: 3147: 3144: 3142: 3139: 3137: 3134: 3132: 3129: 3127: 3124: 3122: 3119: 3117: 3114: 3112: 3109: 3107: 3104: 3102: 3099: 3098: 3096: 3092: 3082: 3081:Types of soil 3072: 3066: 3063: 3061: 3060:Tropical peat 3058: 3056: 3053: 3051: 3048: 3046: 3043: 3041: 3038: 3036: 3033: 3031: 3028: 3026: 3023: 3021: 3018: 3016: 3013: 3011: 3008: 3006: 3003: 3001: 2998: 2996: 2993: 2991: 2988: 2986: 2983: 2981: 2978: 2976: 2973: 2971: 2968: 2966: 2963: 2961: 2958: 2956: 2953: 2951: 2948: 2946: 2945:Dry quicksand 2943: 2941: 2938: 2936: 2933: 2931: 2928: 2926: 2923: 2921: 2918: 2916: 2913: 2911: 2908: 2906: 2903: 2901: 2898: 2896: 2893: 2891: 2888: 2886: 2883: 2881: 2878: 2876: 2873: 2871: 2868: 2866: 2863: 2861: 2858: 2856: 2853: 2851: 2848: 2846: 2843: 2841: 2838: 2836: 2833: 2831: 2828: 2827: 2825: 2821: 2815: 2812: 2810: 2807: 2805: 2802: 2800: 2797: 2795: 2792: 2790: 2787: 2784: 2781: 2779: 2776: 2774: 2771: 2768: 2765: 2764: 2762: 2760:Other systems 2758: 2752: 2749: 2747: 2744: 2742: 2739: 2737: 2734: 2732: 2729: 2727: 2724: 2722: 2719: 2717: 2714: 2712: 2709: 2707: 2704: 2702: 2699: 2697: 2694: 2693: 2691: 2689: 2685: 2679: 2676: 2674: 2671: 2669: 2666: 2664: 2661: 2659: 2656: 2654: 2651: 2649: 2646: 2644: 2641: 2639: 2636: 2634: 2631: 2629: 2626: 2624: 2621: 2619: 2616: 2614: 2611: 2609: 2606: 2604: 2601: 2599: 2596: 2594: 2591: 2589: 2586: 2584: 2581: 2579: 2576: 2574: 2571: 2569: 2566: 2564: 2561: 2559: 2556: 2554: 2551: 2549: 2546: 2544: 2541: 2539: 2536: 2534: 2531: 2529: 2526: 2524: 2521: 2520: 2518: 2515: 2509: 2505: 2498: 2493: 2491: 2486: 2484: 2479: 2478: 2475: 2470: 2468: 2464: 2456: 2453: 2452: 2451: 2450:Soil moisture 2448: 2446: 2443: 2439: 2436: 2435: 2434: 2431: 2429: 2426: 2424: 2421: 2419: 2416: 2414: 2411: 2407: 2404: 2402: 2399: 2398: 2397: 2394: 2392: 2389: 2387: 2384: 2382: 2379: 2377: 2374: 2372: 2369: 2367: 2364: 2362: 2359: 2357: 2354: 2352: 2349: 2345: 2342: 2341: 2340: 2337: 2333: 2330: 2329: 2328: 2327:Soil salinity 2325: 2323: 2320: 2316: 2313: 2312: 2311: 2308: 2306: 2303: 2301: 2298: 2296: 2293: 2289: 2286: 2284: 2283:Pedodiversity 2281: 2279: 2276: 2275: 2274: 2271: 2269: 2266: 2265: 2263: 2259: 2254: 2244: 2241: 2239: 2236: 2234: 2231: 2229: 2226: 2224: 2221: 2219: 2216: 2214: 2211: 2209: 2206: 2204: 2201: 2199: 2196: 2194: 2191: 2190: 2188: 2184: 2178: 2175: 2173: 2170: 2169: 2166: 2162: 2155: 2150: 2148: 2143: 2141: 2136: 2135: 2132: 2120: 2112: 2111: 2108: 2102: 2099: 2097: 2094: 2092: 2089: 2087: 2084: 2082: 2079: 2075: 2072: 2071: 2070: 2067: 2065: 2062: 2060: 2057: 2055: 2052: 2051: 2049: 2045: 2039: 2036: 2034: 2031: 2029: 2026: 2024: 2021: 2019: 2016: 2014: 2011: 2009: 2006: 2005: 2003: 1999: 1993: 1990: 1988: 1985: 1983: 1980: 1976: 1973: 1971: 1968: 1964: 1961: 1960: 1959: 1956: 1954: 1951: 1949: 1946: 1944: 1941: 1939: 1936: 1934: 1931: 1929: 1926: 1924: 1921: 1920: 1919: 1916: 1914: 1911: 1909: 1906: 1904: 1903:Microbial oil 1901: 1899: 1896: 1894: 1891: 1889: 1886: 1885: 1883: 1881:Human related 1879: 1873: 1870: 1868: 1867:Picoeukaryote 1865: 1863: 1860: 1858: 1855: 1853: 1850: 1848: 1845: 1843: 1840: 1838: 1835: 1833: 1830: 1828: 1825: 1823: 1820: 1818: 1815: 1813: 1810: 1809: 1807: 1803: 1797: 1794: 1792: 1789: 1787: 1784: 1782: 1779: 1777: 1774: 1773: 1771: 1767: 1761: 1760: 1755: 1753: 1750: 1746: 1743: 1741: 1738: 1737: 1736: 1733: 1731: 1728: 1726: 1725:Microbial mat 1723: 1719: 1716: 1714: 1711: 1710: 1709: 1706: 1704: 1701: 1699: 1696: 1694: 1691: 1689: 1686: 1684: 1681: 1679: 1676: 1674: 1671: 1669: 1666: 1665: 1663: 1661: 1657: 1651: 1648: 1644: 1641: 1640: 1639: 1636: 1632: 1629: 1627: 1624: 1622: 1619: 1618: 1617: 1614: 1613: 1611: 1607: 1601: 1598: 1596: 1593: 1591: 1588: 1586: 1583: 1581: 1578: 1576: 1573: 1571: 1568: 1566: 1563: 1562: 1560: 1558: 1554: 1549: 1539: 1536: 1534: 1531: 1529: 1526: 1524: 1521: 1519: 1518:Nanobacterium 1516: 1514: 1511: 1509: 1508:Cyanobacteria 1506: 1504: 1501: 1499: 1496: 1495: 1493: 1491: 1487: 1483: 1476: 1471: 1469: 1464: 1462: 1457: 1456: 1453: 1442: 1438: 1434: 1430: 1426: 1422: 1418: 1414: 1410: 1406: 1402: 1401: 1393: 1385: 1378: 1370: 1366: 1362: 1358: 1354: 1350: 1346: 1342: 1338: 1334: 1330: 1326: 1319: 1317: 1315: 1313: 1304: 1300: 1295: 1290: 1286: 1282: 1278: 1271: 1262: 1260: 1258: 1256: 1254: 1252: 1243: 1239: 1235: 1231: 1227: 1223: 1219: 1215: 1210: 1205: 1201: 1197: 1193: 1189: 1182: 1174: 1170: 1165: 1160: 1156: 1152: 1148: 1141: 1132: 1130: 1121: 1117: 1113: 1109: 1105: 1101: 1097: 1093: 1089: 1085: 1078: 1076: 1074: 1072: 1070: 1068: 1066: 1064: 1062: 1060: 1058: 1056: 1054: 1052: 1043: 1039: 1034: 1029: 1025: 1021: 1016: 1011: 1007: 1003: 999: 992: 983: 981: 979: 977: 968: 964: 959: 954: 950: 946: 942: 935: 927: 925:9781400865727 921: 917: 910: 902: 900:9781400849888 896: 892: 885: 877: 873: 869: 865: 861: 857: 853: 849: 845: 841: 834: 826: 822: 818: 814: 810: 806: 802: 798: 794: 790: 786: 779: 775: 765: 762: 760: 757: 755: 752: 750: 747: 745: 742: 740: 737: 736: 727: 724: 721: 718: 717: 711: 709: 703: 701: 700:biofertilizer 697: 693: 686:Pilot project 683: 680: 678: 668: 664: 662: 661:potato blight 658: 657: 646: 644: 640: 636: 632: 628: 623: 621: 620:biopesticides 615: 613: 609: 608: 602: 600: 599: 594: 590: 589: 584: 580: 575: 571: 567: 565: 564:antibacterial 561: 557: 556: 551: 549: 544: 543: 538: 537:biopesticides 532: 522: 520: 516: 512: 508: 503: 500: 496: 494: 490: 485: 482: 477: 475: 474:immune system 471: 467: 452: 450: 446: 442: 438: 434: 430: 420: 416: 413: 411: 407: 402: 399: 398: 392: 389: 385: 384:jasmonic acid 381: 377: 368: 359: 357: 347: 338: 336: 332: 328: 323: 314: 305: 303: 299: 295: 294:Chlorophyceae 291: 281: 279: 275: 266: 264: 253: 250: 246: 242: 238: 225: 222: 219: 218: 217: 215: 205: 203: 202:Actinomycetes 197:Actinomycetes 194: 191: 187: 183: 173: 172: 169: 165: 164: 159: 155: 154:anaerobically 151: 150: 145: 141: 137: 136: 131: 130: 119: 115: 113: 109: 105: 101: 92: 89: 87: 83: 78: 76: 72: 68: 64: 63:actinomycetes 60: 56: 52: 48: 44: 40: 36: 32: 19: 3488:Soil biology 3483:Microbiology 3354: 3347: 3340: 3333: 3326: 3319: 3202:Biogeography 3197:Hydrogeology 3172:Geochemistry 3094:Applications 2990:Martian soil 2418:Soil horizon 2391:Soil texture 2366:Soil quality 2322:Soil sealing 2295:Soil erosion 2223:Soil physics 2218:Soil ecology 2213:Soil zoology 2207: 2203:Soil biology 2161:Soil science 2069:Microswimmer 1963:in pregnancy 1913:Nylon-eating 1796:Spermosphere 1790: 1758: 1557:Microbiology 1404: 1398: 1392: 1383: 1377: 1328: 1324: 1284: 1280: 1270: 1191: 1187: 1181: 1154: 1150: 1140: 1087: 1083: 1005: 1001: 991: 951:(1): 45–62. 948: 944: 934: 915: 909: 890: 884: 843: 839: 833: 792: 788: 778: 754:Soil biology 704: 689: 681: 676: 674: 665: 654: 652: 624: 616: 605: 603: 596: 586: 570:Agrochemical 568: 553: 546: 540: 534: 504: 497: 486: 478: 463: 455:Applications 426: 417: 414: 395: 393: 374: 365: 353: 344: 320: 311: 290:Cyanophyceae 287: 272: 259: 249:tetracycline 245:erythromycin 237:Streptomycin 234: 216:production. 211: 200: 189: 179: 170: 161: 157: 147: 133: 127: 125: 116: 98: 90: 79: 51:fix nitrogen 30: 29: 18:Soil microbe 3398:Groundwater 3212:Archaeology 3146:Agroecology 3116:Soil survey 3055:Terra rossa 3050:Terra preta 3030:Spodic soil 2950:Duplex soil 2930:Brown earth 2910:Alkali soil 2900:Rhizosphere 2895:Laimosphere 2769:(1974–1998) 2726:Inceptisols 2633:Plinthosols 2598:Kastanozems 2428:Soil carbon 2351:Soil health 2332:Alkali soil 2261:Soil topics 2186:Main fields 2101:Siderophore 1862:Phycosphere 1718:viral shunt 1411:: 277–311. 708:groundwater 696:olive trees 542:Trichoderma 519:fatty acids 511:amino acids 499:Mycorrhizae 460:Agriculture 449:rhizosphere 441:plant roots 397:Arabidopsis 356:pseudopodia 341:Flagellates 327:flagellates 302:chlorophyll 263:soil health 231:Antibiotics 190:Nitrobacter 158:Pseudomonas 149:Clostridium 135:Nitrobacter 129:Pseudomonas 112:prokaryotic 82:rhizosphere 3477:Categories 3388:Vegetation 3131:Soil value 3035:Stagnogley 2985:Lunar soil 2940:Dark earth 2925:Brickearth 2890:Pedosphere 2860:Soil crust 2668:Technosols 2653:Solonchaks 2573:Ferralsols 2538:Anthrosols 2413:Soil crust 2386:Soil color 2371:Soil value 2273:Pedosphere 2198:Edaphology 2001:Techniques 1832:Microalgae 1740:microbiota 1735:Microbiome 1523:Prokaryote 770:References 560:antifungal 515:flavonoids 427:Most soil 214:metabolite 160:, such as 86:sugar beet 55:multiplied 53:, in time 3417:Petrichor 3192:Hydrology 3177:Petrology 3121:Soil test 3020:Quicksand 2965:Fill dirt 2905:Bulk soil 2751:Vertisols 2741:Spodosols 2731:Mollisols 2721:Histosols 2706:Aridisols 2678:Vertisols 2673:Umbrisols 2663:Stagnosol 2628:Planosols 2623:Phaeozems 2603:Leptosols 2588:Gypsisols 2578:Fluvisols 2558:Chernozem 2553:Cambisols 2548:Calcisols 2543:Arenosols 2467:Soil type 2356:Soil life 2074:biohybrid 1928:dysbiosis 1745:holobiont 1643:amoeboids 1626:twitching 1441:221360634 1425:0066-4286 1353:0036-8075 1303:2571-581X 1226:0036-8075 1204:CiteSeerX 1112:0036-8075 1024:2090-1232 1008:: 41–54. 868:0036-8075 825:233403664 809:1614-7499 764:Soil life 579:Novozymes 466:nutrients 3373:Land use 3366:See also 3222:Agrology 3005:Paleosol 2920:Blue goo 2875:Gypcrust 2746:Ultisols 2716:Gelisols 2711:Entisols 2701:Andisols 2696:Alfisols 2658:Solonetz 2648:Retisols 2643:Regosols 2618:Nitisols 2613:Luvisols 2608:Lixisols 2593:Histosol 2583:Gleysols 2568:Durisols 2563:Cryosols 2533:Andosols 2523:Acrisols 2433:Soil gas 2193:Pedology 2119:Category 2038:Staining 1970:placenta 1600:Virology 1595:Mycology 1533:Protozoa 1503:Bacteria 1433:32853099 1369:41820015 1361:26293938 1234:18497287 1173:31325219 1120:26273035 1042:35572399 967:27297124 876:10926533 817:33904129 733:See also 583:Monsanto 507:exudates 489:rhizobia 470:hormones 433:bacteria 406:families 388:ethylene 362:Ciliates 335:ciliates 322:Protozoa 317:Protozoa 296:and the 241:neomycin 100:Bacteria 95:Bacteria 75:protozoa 59:bacteria 43:bacteria 3450:  3252:(India) 3167:Geology 2955:Eluvium 2915:Bay mud 2880:Caliche 2870:Hardpan 2865:Claypan 2855:Subsoil 2850:Topsoil 2736:Oxisols 2638:Podzols 2528:Alisols 2516:(1998–) 2339:Soil pH 2172:History 1668:Biofilm 1660:Ecology 1631:gliding 1528:Protist 1498:Archaea 1333:Bibcode 1325:Science 1287:: 106. 1242:2844984 1196:Bibcode 1188:Science 1092:Bibcode 1084:Science 1033:9091736 848:Bibcode 840:Science 493:legumes 429:enzymes 401:hormone 350:Amoebae 331:amoebae 186:ammonia 144:nitrate 140:nitrite 108:viruses 104:Archaea 88:roots. 3439:  3065:Yedoma 3000:Muskeg 1975:uterus 1958:vagina 1923:asthma 1805:Marine 1769:Plants 1609:Motion 1490:Groups 1439:  1431:  1423:  1367:  1359:  1351:  1301:  1240:  1232:  1224:  1206:  1171:  1118:  1110:  1040:  1030:  1022:  965:  922:  897:  891:Oxygen 874:  866:  823:  815:  807:  591:and a 445:manure 292:, the 110:, are 3045:Takir 2980:Loess 2177:Index 2091:Omics 2047:Other 1948:mouth 1933:fecal 1538:Virus 1513:Fungi 1437:S2CID 1407:(1). 1365:S2CID 1238:S2CID 821:S2CID 692:vetch 574:Bayer 437:fungi 410:phyla 284:Types 274:Algae 269:Algae 256:Fungi 142:into 71:algae 67:fungi 3295:(US) 3284:(UK) 3278:(US) 3010:Peat 2845:Loam 2840:Clay 2835:Silt 2830:Sand 2268:Soil 1953:skin 1943:lung 1429:PMID 1421:ISSN 1357:PMID 1349:ISSN 1299:ISSN 1230:PMID 1222:ISSN 1169:PMID 1116:PMID 1108:ISSN 1038:PMID 1020:ISSN 963:PMID 920:ISBN 895:ISBN 872:PMID 864:ISSN 813:PMID 805:ISSN 671:Fade 637:and 562:and 439:and 386:and 333:and 247:and 102:and 73:and 45:and 39:soil 2995:Mud 1938:gut 1413:doi 1341:doi 1329:349 1289:doi 1214:doi 1192:320 1159:doi 1100:doi 1088:349 1028:PMC 1010:doi 953:doi 856:doi 844:289 797:doi 622:". 37:in 3479:: 1435:. 1427:. 1419:. 1405:58 1403:. 1363:. 1355:. 1347:. 1339:. 1327:. 1311:^ 1297:. 1283:. 1279:. 1250:^ 1236:. 1228:. 1220:. 1212:. 1202:. 1190:. 1167:. 1155:22 1153:. 1149:. 1128:^ 1114:. 1106:. 1098:. 1086:. 1050:^ 1036:. 1026:. 1018:. 1006:38 1004:. 1000:. 975:^ 961:. 949:70 947:. 943:. 870:. 862:. 854:. 842:. 819:. 811:. 803:. 793:28 791:. 787:. 710:. 645:. 643:pH 513:, 435:, 382:, 378:, 337:. 329:, 243:, 239:, 69:, 65:, 61:, 3410:/ 2496:e 2489:t 2482:v 2153:e 2146:t 2139:v 1474:e 1467:t 1460:v 1443:. 1415:: 1371:. 1343:: 1335:: 1305:. 1291:: 1285:4 1244:. 1216:: 1198:: 1175:. 1161:: 1122:. 1102:: 1094:: 1044:. 1012:: 969:. 955:: 928:. 903:. 878:. 858:: 850:: 827:. 799:: 618:" 550:. 171:. 20:)

Index

Soil microbe
microorganisms
soil
bacteria
microorganisms
fix nitrogen
multiplied
bacteria
actinomycetes
fungi
algae
protozoa
rhizosphere
sugar beet
Bacteria
Archaea
viruses
prokaryotic
Pseudomonas
Nitrobacter
nitrite
nitrate
Clostridium
anaerobically
Pseudomonas aeruginosa
electron acceptor
nitrogen fixation
ammonia
Actinomycetes
metabolite

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